sanger-pathogens circlator issues

sanger-pathogens / circlator

A tool to circularize genome assemblies

http://sanger-pathogens.github.io/circlator/

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issues

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circlator stuck

#188 jpinus opened 1 month ago
0
Update assemble.py

#187 ramongallego opened 2 months ago
0
split tests to allow for testing without spades installed

#186 mr-c closed 10 months ago
0
Error running fixstart with Docker:latest

#185 erinyoung closed 3 months ago
0
Create 80

#184 HieuVoDL opened 1 year ago
0
AMOS installation error

#183 ChongLC opened 1 year ago
0
Update dnaa.py

#182 matt-plumb opened 1 year ago
0
Should the assembly be a reference genome?

#181 elcortegano opened 2 years ago
1
Mitochondrial Fixstart - Control Region as Origin

#180 JamesHowie14 opened 2 years ago
0
error with circlator

#179 sekhwal opened 2 years ago
0
Found canu but couldn't get version. (canu 2.2)

#178 ppflrs opened 2 years ago
2
Assembler canu run gets terminated

#177 Rmmendoza opened 2 years ago
1
Use Circlator with nanopore reads of ancestral strain

#176 SamuelGreenrod opened 2 years ago
0
support canu version string match

#175 hyphaltip closed 2 years ago
0
Circlator for polished genome

#174 rthapa1 opened 3 years ago
1
Circlator seems to run forever

#173 tnn111 opened 3 years ago
2
what's meaning of the original_assembly.fasta and new_assembly.fasta?

#172 wanjinhu opened 3 years ago
1
Using spades --isolate option in circlator all

#171 brettmorg opened 3 years ago
0
Add install of default JRE in Dockerfile

#170 Lfulcrum closed 3 years ago
2
circlator test fails at merge step

#169 davidjstudholme opened 3 years ago
3
Remove support email from README

#168 garethpeat closed 4 years ago
0
no specific circularization record

#167 zhaoxvwahaha opened 4 years ago
0
Should we do polish（racon+pilon） or circlator first

#166 zhaoxvwahaha opened 4 years ago
0
Invalid kmer coverage histogram

#165 s4251484 opened 4 years ago
1
Paired-end reads

#164 DarrenObbard opened 4 years ago
0
fixstart stringency

#163 rjsorr opened 4 years ago
1
Didn't find canu in path. Looked for:canu

#162 jellila opened 4 years ago
3
circlator failed to detect Canu 'suggestCircular=yes' contigs

#161 bitcometz opened 4 years ago
2
If these two matches are the same, then the second longest match is used.

#160 bitcometz opened 4 years ago
0
circlator and amos conflict with python distribution

#159 Ram-Nagar opened 4 years ago
0
Found canu but couldn't get version on Linux system

#158 liaochenlanruo opened 4 years ago
0
Docker image fix

#157 trstickland closed 4 years ago
0
Docker image fix. Locales were not properly set, breaks Circlator when run in Singularity,

#156 trstickland closed 4 years ago
0
AMOS install

#155 trstickland closed 4 years ago
0
Could not obtain circular genome!!

#154 sneupane01 opened 4 years ago
0
docker build required 2 extra debian packages

#153 trstickland closed 4 years ago
1
canu version

#152 aistBMRG opened 5 years ago
2
Add AMOS install

#151 ybendana closed 4 years ago
1
After running circlator reduction of 6 genomes in assembly to 3.

#150 severst opened 5 years ago
0
Problem with option gnuplotTested=true when calling canu

#149 guibar opened 5 years ago
4
Badge

#148 puethe closed 5 years ago
0
Failed to Partition the reads

#147 Frazapel opened 5 years ago
0
--spades_k error when using all

#146 nblouin closed 4 years ago
1
Can I use it to circulate viral genomes

#145 housw opened 5 years ago
0
Added changelog

#144 ssjunnebo closed 5 years ago
0
Version of numcer too low (v1.5.5)

#143 mkillean opened 5 years ago
6
Question about genome circularization

#142 Nifaste opened 5 years ago
6
fix readme and add to codecov

#141 ssjunnebo closed 5 years ago
0
Java requirement error in java

#140 conchoecia closed 3 years ago
3
Error making output directory

#139 conchoecia opened 5 years ago
0