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Hello I am trying to run a non-model organism through TOBIAS ...
```
run_info:
organism: insect
```
I have added the genome size to macs
```
macs: "--gsize 222255331 --nomodel --shift…
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Hi,
Thanks for the great package.
I was running spacemake with visium data, and got an exception:
rule run_automated_analysis:
input: projects/visium_demo/processed_data/DSG_Control/illumi…
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- Main Dashboard Brainstorming
- Pipeline group status (# of Running, # of Failed, # of Completed - Chart)
- Latest pipeline status
- Number of pipelines
- Spec (?), notification f…
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Hi,
when using special executors, these come with additional command line flags, e.g. `--slurm-requeue` for the slurm executor plugin. These are pretty important to tune the execution, can be place…
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**Is your feature request related to a problem? Please describe.**
I am using snakemake via the API from Python. I will be executing long running workflows at the command line where I would like to…
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https://github.com/snakemake/snakemake/issues/2607
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**Snakemake version**
8.20.3
**Describe the bug**
When using `cache: True` on a rule with directory output, following the symlink to the .snakemake_timestamp on this line
https://github.c…
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**Software Versions**
snakemake 8.18.2
snakemake-executor-plugin-slurm 0.10.0
snakemake-executor-plugin-slurm-jobstep 0.2.1
slurm 23.02.7
**Describe the bug**
The number of threads speci…
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### Is your feature request related to a problem? Please describe.
I'm a new user and have downloaded the large volume of `vcf`-type files required to act as the reference.
### Describe the sol…
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**Snakemake version**
*snakemake-wrappers:* 3.3.3
**Describe the bug**
The wrapper looks for the index file checking for *.ht2* file extension only. So this fails when a *large* index was pr…