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Feature subsetting methods include at least `subsetByRareTaxa` and `subsetByPrevalentTaxa`.
The problem is that these do not collapse the `rowTree`. That has to be done separately:
```
# Add su…
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I would like to remove ALL unused chars automatically, and not having to use `options.chars`.
I would like to pass some .html files to this processor so he automatically removes all subsets which are…
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Submitted by: Garrett See; Assigned to: Nobody; [R-Forge link](https://r-forge.r-project.org/tracker/index.php?func=detail&aid=2371&group_id=240&atid=978)
The xts package has a last.default method …
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The mesh in the *seam* section seem to sometimes include two nodes that are almost at the same spot. See https://github.com/noaa-ocs-modeling/SurgeTeamCoordination/issues/143#issuecomment-1844362533
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when I select a subset of cells using `ad_sub=ad[ad.obs['louvain']=='subcluster_of_interest',:]`, and then re-apply preprocessing routines, this will use only the genes of `ad.X` (variable over the en…
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Dear vireo developers,
Thank you very much for your really nice package. I have a question regarding finding the discriminatory variants between groups of donors that vireo found.
The overall ob…
WWolf updated
2 years ago
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From Schema Team meeting notes of 2017-01-10:
> Terry will also document how the new EAD3 schema can be customized locally since that new feature hasn’t been documented yet; Terry will include at …
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Hi Sfaira Team,
**Is your feature request related to a problem? Please describe.**
I was wondering if it is possible to subset a universe further by removing/keeping all datasets which do have an …
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The following shiny app allows me to subset the data and then redraws a bar graph. Is it possible to have an animation where the bars change size instead of the discrete jumps that I have now?
```
#…
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Casual user may want to pass in an entire SCE but just the rho matrix corresponding to their marker genes. In theory we should be able to detect this and appropriatley subset the SCE by matching the `…