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### Description of feature
This issue is to provide an overview of different tools and related sub-issues related to supporting multiple modalities:
- CITE-seq (=RNA+protein) (https://github.co…
grst updated
4 months ago
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Most of the TCR sequences downloaded from the databases I reviewed are beginning with C and ending with F, and some articles also mentioned that this is more in line with the characteristics of CDR3 s…
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Hi,
I am testing this package with my VDJ data but I found that our output were from Cellranger 5.0, where it miss some columns (see https://github.com/scverse/scirpy/issues/279)
I get errors l…
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Requirement Xbox LIVE Arcade titles must support both trial and full versions of the game. The game must check the license and launch the trial or the full version appropriately. The trial version mus…
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Requirement Games must obtain positive confirmation of player intent before performing actions that will result in loss of player data or game state. Confirmation must consist of both of the following…
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The production server is currently using an old commit ([`13e748f`](https://github.com/phbradley/tcr-dist/tree/13e748ffd00e8b564ac9e7d01d6a004e2553538c)) of the [`tcr-dist`](https://github.com/phbradl…
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Hi,
When running the `tracer summarise` function, I get the following error:
```
Traceback (most recent call last):
File "/home/sebastiaan/miniconda3/envs/tcr_epi_benchmark/bin/tracer", line 3…
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Hi,sorry to waste your time. But i can't find models located at "/home/wukevin/projects/tcr/tcr_models/bert_class_pird_antigen_cv/bert_class_pird_excl_*".This path is in your computer and it seems tha…
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This is a great tool! Thank you for development. Can you please generate/provide similar T subset resources for mouse datasets? It will be greatly useful as many labs including ours generate CITE-seq …
nroak updated
1 month ago
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Hi,
We have tried using Q3 and TMM normalisation for DSP WTA data. But when it comes to TCR spike-in add-on data, which normalisation methods (Q3, TMM or Poisson threshold model based normalisati…