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In dipy 1.1.0, any time I run local tracking (deterministic or probabilistic) using a CSD reconstruction on certain datasets, I get the following error (takes different forms depending on the tractogr…
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## Project info
**Title: Fantastic measures and how to repeat them: tractography-based test retest reproducibility of microstructural MRI**
![brainhack_icon](https://user-images.githubuserco…
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There used to be a draft of the derivative spec here: https://bids-specification.readthedocs.io/en/derivatives/05-derivatives/06-diffusion-derivatives.html, but that link now seems broken and I can't …
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## For Monday
|status | deliverable | notes |
| :---| :--- | :--- |
| Partially complete | Batch working with our pipeline. https://hub.docker.com/r/jliu118/clarityrun/ | @alee156 |
| 👍 | [Imp…
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When in `_label.h5` creation, it requires `groundTruthLabel` as an argument to `dlt_extract_tract_feat.py` . I am facing trouble in finding how to create GroundTruthLabel, even after subject_specific_…
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I use the transform modification method to register a T1 image to a DWI image. I usually can overlay the registered T1 over the DWI/FA image in mrview. In the latest mrview this doesnt work. I get the…
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As the software only supports the .vtk format, I would like to ask suggestions/proposals to incorporate the usage of .tck format as follows: For example, is it possible to modify the code so as to giv…
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Either in TractographyDisplay or FiberTractMeasurements (possibly both).
Also consider adding some volume measurement (intersected voxels? envelope?)
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### Description
Currently, the connectivity workflow expects a parcellation to be provided in order to map connectivity between different regions. Add an additional workflow / argument that accepts s…
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Dans les plugins de diff, j'ajoutais avant des infos a l'image de résultat (genre quand je fais une tractographie, je rajoute tracks au nom de fichier).
Ceci a maintenant disparu et j'ai juste des _…