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Hello, thank you for your convenient tools. I want to only focus on TFs regulating a exact set of genes and construct regulatory network on it. How can I do it? Is it right to use gene sets tpms expre…
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hello,
I work TFpredict with interproscan-5.52-86.0 and latest blast in conda environment, with followed commands;
java -jar ~/Softwares/Miniconda3/DeepTFactor/TFpredict/dist/TFpredict_1.3.jar \
…
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Hi Taoliu,
I am using macs2 for CUT&RUN transcription factor peaks. My biologist colleagues pointed out some peaks that are not called, but are visible in the rpm-normalized bedgraph visualization,…
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_From [batchelorc@rsc.org](https://code.google.com/u/batchelorc@rsc.org/) on January 07, 2010 18:42:31_
Hello,
Currently in RO there's a causes relation between a continuant and an
occurrent.
But o…
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see GO ticket go-ontology/issues/23135
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@LiNiMGI pointed out on the workbenches call that when she is required to move to the graph editor from the form. If she changes a single item in the graph and moves back to the form, all of the dates…
ukemi updated
9 months ago
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These terms should be in the subset gocheck_obsoletion_candidate and NOT in gocheck_do_not_annotate
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0006469 ne…
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Hi,
Is there a specific option to set when run macs2 in broad mode in order to get summit location? I want to call broad peaks for histone modification, when I run the following command:
```
ma…
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This PK: be8dbb09-25da-4592-b00c-289922a5bf2c
Shows some warnings for ARAGORN
https://arax.ncats.io/?r=d6a12851-c7da-443b-a333-15d816f3a8af
https://arax.ci.transltr.io/?r=be8dbb09-25da-4592-…
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cycle switching, mitotic to meiotic cell cycle
could this be relabelled as "meiotic commitment" as this seems to be what it is usually referred to? Nobody calls it "cell cycle switching, mitotic …