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see GO ticket go-ontology/issues/23135
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Hi again,
I would like to know, in modkit pileup output file, as well as in bedgraph, not all genomic position are represented
For example :
contig_103 13 14 0.18691589 107
contig_103 19 20 0.081…
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Dear Alex :
My question is the same to the title. May someone ask the same question but I cant find everywhere except here : https://pipe-star.readthedocs.io/en/latest/explain_star.html
Bu…
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Dear Oliver Tam,
I am trying to use TElocal tool to find to find transposable elements within my sequence alignments.
I have run the following command :
TElocal --sortByPos --mode uniq -b SEQ400…
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Hello, I want to download the PGSB and REPBASE datasets, but I cannot find the link in your paper or GitHub. I navigated to the referenced paper "Top-down strategies for hierarchical classification of…
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Hi,
1) I would like to know how TEcount/TEtranscripts produce the count matrix. I have aligned my paired-end reads with STAR using the recommended parameters (-outFilterMultimapNmax 100 --winAnchor…
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In the validation of anvil5, populated dataset descriptions are not being displayed. [This document](https://docs.google.com/document/d/17JtCSY6BTbU_dltA0mF06XMdFcpN_1oG5D9sjoQuqjQ/edit) contains two…
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Is there a quick way to check all the pre-requisites were installed correctly and tlex3 will run properly?
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I'm using the latest Funnanotate, but when I reach the "funannotate predict" step I get this:
```
augustus: ERROR
PP::Profile: Error parsing pattern file"/sw/anaconda/2019.10/envs/funanno…
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Should we submit transposon annotations to GO?
Should we submit dubious proteins to GO?
This question arose because of discrepancies making species comparisons.
It would be especially usefu…