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Dear Jon,
I looked thoroughly at my previous funannotate results (derived a month ago) and found that **funannotate-p2g.py** seems to fail. As a result, finally, out of 500,000 proteins, tblastn ha…
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as identified in https://github.com/edamontology/edamontology/issues/292#issuecomment-314162572
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Dear Jon,
I have launched funannotate predict with the following parameters, and it has failed:
```
funannotate predict -i 901.masurca.scf.fasta -o 901.fun_out --species "Linum usitatissimum" -…
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I am trying to use RepEnrich to look at repetitive elements in the zebrafish genome and I am having some issues. I am getting the following error when I run RepEnrich.py, for just about every repeat …
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Hi! This may be a prokka error but I can't get the conatiner to run on ubuntu 16.04. I'm getting the following error ```[05:00:26] Looking for 'blastp' - found /usr/local/bin/blastp
blastp: error whi…
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Hi to all,
I noticed that if a try to parse with SeqIO.parse this genbank_record, it misses some features (in particulart tRNA).
The record is X93575.1.
This is the typical output:
handle = open(gb…
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Hi,
So I install fusioncatcher and the data separately like this:
```
wget http://sf.net/projects/fusioncatcher/files/bootstrap.py -O $bin/bootstrap.py
python2.6 $bin/bootstrap.py --install-al…
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I'm testing the example pipeline in bcbio (small rna seq)
When I checking the data in pipeline, I saw the error log.
mirqc_bcbio/work/mirdeep2$ less error_res.log
RNAfold: invalid option -- n
sh: 1…
hmkim updated
8 years ago
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Hi,
I encountered the following triples indicating the Targets (CYP3A) of Cobicistat:
```
kegg:D09881 kegg_vocabulary:target kegg_resource:52292de0a46622a5ed543f7ab93393f8.
kegg_resource:52292de0a46…
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The names of the terms in the node 'RNA processing ;
GO:0006396' need to be changed so that they don't contain
sedimentation co-efficients i.e. need to be broad enough to apply
to any organism - at…