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Hi,
How to export the network data to Cytoscape when I run `scWGCNA.networks`?
```
MmLimbE155.scWGCNA = scWGCNA.networks(scWGCNA.data = MmLimbE155.scWGCNA)
```
Or how can I select/filter some gen…
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**Important note to the person writing this issue**
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I am new to computational work. I keep running into this specific error when trying to use any of the plot functions, such as PlotDMEsVolcano: Error: colours encodes as numbers must be positive.
Howe…
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Hi Chi!
I am working with co-ocurrence networks and I constructed my networks with python in a local server.
However, I would like to use the microeco to do the node classification. Is there an…
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**Describe the bug**
When using the plot for KMEs and the lolliplot plot for differential module expression, I get an incompatibility error. This happen in general with any data, and with the lates…
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By default `rank()` uses the 'average' method to break ties, while `rowRanks()` uses the 'max' method:
```
> args(rank)
function (x, na.last = TRUE, ties.method = c("average", "first",
"last…
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And, after runing iterativeWGCNA with the following code:
iterativeWGCNA -i data.txt --wgcnaParameters maxBlockSize=50000,nthreads=20 --enableWGCNAThreads
I got 15 pass (pass1 to pass 15) and more…
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67fc51710d2d7968cf30206a2a64e927fa99b29f
https://github.com/STAT540-UBC/team_Undecided/blob/master/project_proposal.md
@ppavlidis @singha53 @farnushfarhadi
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Hi,
Thanks for creating such a great tool! And congratulations on defending your PhD!
Just a note that using my settings (described below), I continually got an error with TestSoftPowers functi…
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When I installed CWGCNA according to instructions, install_github("yuabrahamliu/CWGCNA") returned a error.
`Error: Failed to install 'CWGCNA' from GitHub:
input string 1 is invalid
Warning:
In …