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Hello, I would like to study the genetic correlations of several diseases in East Asians, and below is the log file. I am wondering why so many SNPs are being excluded due to valid alleles QC. Could y…
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Resolved in https://github.com/yichaoS/cbioportal/commit/3c97bef7d94a6dca172cfd71a9aa4b237187707a
![screen shot 2016-11-18 at 1 39 28 pm](https://cloud.githubusercontent.com/assets/5973438/20441990…
jjgao updated
5 years ago
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I get the error below when calculating z scores using WHO anthro for all time points except at baseline. It works just fine when I use a different age variable (for the first time point/baseline). M…
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Currently [this line](https://github.com/stephenslab/mashr/blob/c4e0063604175835619b312342517bb60a60abbb/R/data2cov.R#L16) gives a warning when it appears betahat is used to compute the data-driven ma…
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Since #1000, we have stopped returning numeric z-scores in the result when you hit `/api/benchmarks/?run_id=ABC`. One consequence of this is that the webpage for `/runs/ABC` no longer displays values …
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I'd love for us to have a lightweight changelog somewhere where we document what we changed about this method when and why.
Iteration on a method is beautiful, it implies accumulation of knowledge.…
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1. Could we add some indication (prior or post) to`simulated_values` name? I was confused for a long time :D
It seems likely that `simulated_value` are prior sample values from [this](https://github.…
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- [ ] find specific features or feature combinations that correlate directly with z-score
- [x] overlay z-score onto scatterplot to show grouping of high/low-z-score samples. (including positive and n…
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There is a bug on computing z-scores from p-value:
In sum_stats_parsers.py, line 182, it computes the lower tail of the normal distribution, which leads to reverse sign of Z-scores. Either adding a n…
mxcai updated
4 years ago