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Hi,
I have 3 technical repeats (sequenced across 3 lanes, PE reads) for each biological replicate. I am trying to read in technical repeat fastq files together into IRFinder. I've not merged the se…
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Hi,
I am trying to predict sRNAs from RNA-seq data using ANNOgesic 1.0.16, and I should perform transcript detection first accroding to the tutorial. However, I got errors when performed transcript…
gjh34 updated
4 years ago
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I am running on Windows 10 using the New Wallet 5.02 which continues to wrongly report error, "Miner: No coins." However, I have over 92,480 coins, solo mining, as shown correctly in the old Wallet 4.…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LTLA/csawBook
Confirm the following by editing ea…
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**Submitting author:** @jonschwenk (Jon Schwenk)
**Repository:** https://github.com/jonschwenk/RivGraph
**Version:** v0.4
**Editor:** @kbarnhart
**Reviewer:** @eriknes, @leotrs
**Archive:** 10.5281/ze…
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**Describe the bug**
Hello,
I am running the pipeline again with some new samples, and it runs smoothly for Filtering and Mapping. However, it seem to fail at the Counting stage. I think the error s…
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Hello
Thanks a lot for the program. I'm trying to call de novo variants in my trio, its normal takes 5 days? with Varscan just takes 1-2 hours.
Thanks
ccs76 updated
4 years ago
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Ran a test to calculate D statistics as followings,
ANGSD -doAbbababa2 1 -bam test.bam.list -sizeFile test.bam.size -doCounts 1 -out test.bam.Angsd.1240k_test -anc $chimpFasta -rf 1240k.regio.test.v1…
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Hi, I had a couple questions about the MAP_VAF field under the cancer calling model. I'm currently running octopus on targeted non-human sequencing data with the --very-fast flag and focusing on a sub…
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Morning Wouter,
I have this simple snippet of error from a Snakefile (pipeline_structural_variation) - a user is exploring structural variation with large PromethION datasets.
Do you have any th…