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I was trying to use FAN-C to do some transformations on a Juicer `.hic` file (the GM12878 Hi-C, Rao et al. 2014). First of all, I converted the original file to FAN-C format by:
```
fanc from-juic…
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## Date
Monday 30 August 2021 - 11am EST / 4pm UK
## Untracked attendees
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**Dataset/group this task is for:**
Single-cell data: GSE116113
Bulk data: GSE105019
Google Sheet: https://docs.google.com/spreadsheets/d/1N82P4kNT2TkIWyEeTiX3sEpX6qw3zjRwqprLcEVyupY/edit#gid=186…
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Hi, thanks for GeMoMa - it works really well! I've recently run into an issue where I get the below error. I've been annotating 6 bird genomes and 5 out of the 6 finish without an error, but the 6th r…
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add audio notifications for bad electrode connection and timers
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Hello,
Based on your science paper entitled "Brain cell type–specific enhancer–promoter interactome maps and disease risk association", you also performed RNA-seq in neurons/astrocytes/micorglia/…
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Hi @joachimwolff
I am sorry for the naive question but I can't see what I am missing here.
I used to count the number of cis interactions using simple commands like (here the in.h5 is a plain …
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@MaximilianLombardo and @pablo-gar identify that we often receive datasets where the "normalized" count data contain a subset of the gene features of the "raw" count data. This occurs because toolchai…
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Since I need more number precision for my game, I tried to recompile the engine with REAL_T_IS_DOUBLE, however it doesn't work.
It seems like float have been used here and there in place of the abstr…
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I started a test run with `make test` but the log was greater than my terminal history. Here is the end of it, along with a few other commands showing the branch/commit and variable set.
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