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## Description
Hello! I have run the `Analyze.decompose_fit` function from SigProfilerAssignment to decompose several SBS96 _de novo_ signatures using a signatures database. There were no problems du…
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## Description
After discussiong with @moahaegglund it seems like cg only uses customer id to decide which loqus database to upload the vcf to. Sometimes tumour samples are sent through cust002 and…
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Trying to run minimac4 v4.1.2 I am getting segmentation faults:
minimac v4.1.2
Imputing 1:1-20000000 ...
Loading target haplotypes ...
Loading target haplotypes took 0 seconds
Loading reference…
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Hi !
I got this errors while running graphunzip.py using linked reads.
`,ignoring the line, are you sure the BX:Z: tags are there ?`
And then output is only filled with this lines.
```
^D¶…
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e.g. https://batch.hail.populationgenomics.org.au/batches/431584
(I've seen this happen before, so the issue is based on that. For this linked batch I'm not sure if this correctly characterises the…
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After trying to basecall a sample which stopped while basecalling and combining with previously basecalled reads I am getting this error. The incomplete bam file was generated by Picard FastqToSam, no…
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### Need
As a geneticist I want to receive a manageable number of structural variants to interpret. Currently after correcting the order of the trimming in Balsamic V13.0.0 we are getting a lot mor…
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I am trying to run the `CNVkit 0.9.11.dev0` copy number calling pipeline for a whole exome sequencing sample. However, I am encountering a type error `TypeError:batch_run_sample() takes from 16 to 17…
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Hi!
I've created a container using Singularity and Alpine Linux 3.7, including all the mentioned dependencies for GATK 4.0.0.0 (JDK8, GCC, R, R-Dev, Python, libgomp) and tried running HaplotypeCall…
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Hi,
thank you so much for this amazing tool! I'm encountering issues with a couple of annotators. Despite searching online, I haven't been able to resolve these problems myself. Thank you for taking…