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```
a=/hot/users/yiyangliu/MoPepGen/Parser/VEP/gencode/gsnp/CPCG0324.gencode.tsv.s.gvf
b=$(basename -- "$a"); echo ${b};
c="${b%%.*}"; echo ${c};
moPepGen callVariant \
--input-variant /hot/u…
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**Preferred term label:** Syntelencephaly
**Synonyms** Middle Interhemispheric Variant of Holoprosencephaly, MIH, midline interhemispheric fusion, MIF
**Definition (free text, please give P…
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https://mp.weixin.qq.com/s/9DDa3MRf-Y5ZgGPgb0QNiQ
ixxmu updated
2 years ago
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This is just a gift that keeps on giving XD
```
a=/hot/users/yiyangliu/MoPepGen/Parser/VEP/ensembl/gsnp/CPCG0100.tsv.s.gvf
b=$(basename -- "$a"); echo ${b};
c="${b%%.*}"; echo ${c};
moPepGen ca…
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#### What are the scientific goals of the analysis?
From email discussion with Dr. Sarah Tasian, we have the following information that we should use to subtype AML.
>I have included our pedia…
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Hello,
I have been getting a couple of warnings when I run the 'STAR in conjunction with Arriba' method. I would like to understand a bit better how much they affect the fusions output file.
Bel…
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Currently known:
CPCG0241
CPCG0262
GVFs in here: `/hot/project/algorithm/moPepGen/CPCGENE/processed/noncanonical-database/call-nonCanonicalPeptide/GRCh38-EBI-GENCODE34/input_csvs/CPCG.csv`
I…
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For STAR-Fusion, FusionCatcher, and Arriba, the fusion events in the final output either only have gene IDs, or the transcript ID isn't complete. In the parsers, we right now assumes that a fusion eve…
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it's been a while since parseXXFusion parsers were developed and I believe lots has changed with the index and TVF/GVF lol
finally starting to test on real data XD
command
```
docker run -u $(…
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I'm running Linx as:
`java -jar $EBROOTLINX/linx_v1.17_beta.jar -sample $sample_name -ref_genome_version 38 -sv_vcf $sv_vcf -purple_dir $output_dir_purple -output_dir $output_dir_linx -fragile_site…