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- [ ] New analysis tool: Calculate enrichment of a pathway across Conditions
- [ ] New plotting function: Distribution of gene-set score across Conditions.
Hi,
I really like your implemen…
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Thank you for developing such an amazing tool!
I was just wondering if the NicheNet would be suitable to study the communication occurring between two closely interacting tissues. To make it clear, …
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The manuscript [Using multiple reference genomes to identify and resolve annotation inconsistencies](https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6696-8#MOESM1) is a recent public…
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Hi,
I have ScRNA and ScATAC data from same experiment (not multiomic) and I followed the merge vignette to merge the 5 samples (2 groups) based on intersecting peaks as shown in the vignette.
Comin…
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Hi. It looks like I am running into issues with DNA motif analysis and specifically when I use the function add motifs(). I would really appreciate some feedback or help on this issue. Thank you f…
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Hi all,
Quick question - can you explain the criteria used to determine which barplots are automatically generated in the output files? The github page says "barplots with GO annotations ranked by …
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I need to create annotation package like (org.Hs.eg.db) for two organisms:
1-Galleria mellonella ASM364042v2
2-Madurella mycetomatis ASM127576v2\
Both genomes are assembled in scaffolds level
For …
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Hello,
Depending on the input data type (RNA-seq, array) and normalization methods I sometimes get the enrichment score as values ranging from 0 to 1 whereas others I get values that seem to range …
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Dear,
I read the paper and it is very helpful but I confused on the following questions
First: what is the difference between the 2 parameters gene_sets and pin_name_path ?
Second: Is it possible t…