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egeulgen
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pathfindR
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
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Running run_pathfindr on multiple gene_sets
#210
CDSchuster
opened
1 week ago
2
Pathfinder attaches KEGG organism ID to gene IDs
#209
Rohit-Satyam
closed
3 weeks ago
1
All p_values must be numeric error
#208
hurasafe
closed
1 month ago
4
Release pathfindR 2.4.1
#207
egeulgen
closed
2 months ago
0
Remove KEGG ID to gene name conversion from `get_kegg_gsets`
#206
egeulgen
closed
2 months ago
0
pathFindR get_gene_set_list() gives wrongly formatted results for non-model organism
#205
Rohit-Satyam
closed
2 months ago
5
Release pathfindR 2.4.0
#204
egeulgen
closed
2 months ago
0
Feature/ add ability to fetch latest version of BioGRID
#203
egeulgen
closed
2 months ago
0
Add plot saving examples
#202
egeulgen
closed
2 months ago
0
Fix/implement non hsa id conversion in get kegg gsets
#201
egeulgen
closed
2 months ago
0
Use `ggkegg` for visualisation of all KEGG pathway diagrams
#200
egeulgen
closed
2 months ago
0
DRAFT: Add active-subnetwork search methods implemented in R
#199
egeulgen
closed
2 months ago
0
Update workflows
#198
egeulgen
closed
2 months ago
0
Add branch naming policy
#196
egeulgen
closed
2 months ago
0
Use Metascape to generate the GO term ,but not find any enriched terms in analysis
#195
fuck7414
closed
2 months ago
4
PathfindR not supporting M3 Mac?
#194
jasoncrucify
closed
3 months ago
6
Issue with procuring MSigDB gene lists for mice
#192
t3h4nt1chr15t
closed
4 months ago
7
Release pathfindR 2.3.1
#191
egeulgen
closed
5 months ago
0
Fix bug in upset plot with upcoming ggplot2 version - fixes #189
#190
egeulgen
closed
5 months ago
0
Upcoming changes in ggplot2
#189
teunbrand
closed
5 months ago
2
Installation errors
#188
avishai987
closed
5 months ago
3
Fix score terms gene mismatch - fixes #186
#187
egeulgen
closed
5 months ago
0
score_terms Gene_Symbol capitalization problem
#186
limey-bean
closed
5 months ago
0
Enable scale fill manual for term gene graph + minor improvements
#185
egeulgen
closed
7 months ago
0
term_gene_graph() function: V(g)$color doing work that aes() and scale_color_manual() should do
#184
rafalcode
closed
7 months ago
0
different results by using run_pathfindR() vs step-by-step workflow
#183
AliSaadatV
closed
9 months ago
3
Release pathfindR 2.3.0
#182
egeulgen
closed
9 months ago
0
fix tests
#181
egeulgen
closed
9 months ago
0
Reformat all
#180
egeulgen
closed
9 months ago
0
fold change filtering possibility
#179
abedkurdi
closed
9 months ago
2
Single gene in a significant pathway
#178
AliSaadatV
closed
9 months ago
3
Reformat all R scripts using formatR
#177
egeulgen
closed
10 months ago
0
Revert removal of HTML report
#176
egeulgen
closed
10 months ago
0
Refactoring & improvements for tests for all functions
#175
egeulgen
closed
10 months ago
0
Release pathfindR 2.2.0
#174
egeulgen
closed
10 months ago
0
update package documentation and fix #172
#173
egeulgen
closed
10 months ago
0
CRAN error
#172
egeulgen
closed
10 months ago
0
HTML report not generated
#171
JureFabjan
closed
10 months ago
2
Error in file(con, "wb") : cannot open the connection
#170
lucasrocmoreira
closed
11 months ago
1
KEGG pathway diagram 1. UnableToReadFont `helvetica' 2. proteins not showing the proper color
#169
Huan-Jui-Chang
closed
11 months ago
8
Fatal error after Rstudio and R Update
#167
kratzera
closed
10 months ago
7
Issue with visualize_terms() containing invalid API url calls
#166
kyle-kroll
closed
1 year ago
1
p value error
#165
babywing
closed
11 months ago
4
Error in { : task 1 failed - "could not find function "active_snw_search""
#164
PyrearSuhuiZhao
closed
11 months ago
17
Release pathfindR 2.1.0
#162
egeulgen
closed
1 year ago
0
Release pathfindR 2.0.1
#161
egeulgen
closed
1 year ago
0
Release pathfindR 2.0.0
#160
egeulgen
closed
1 year ago
0
Error in magick_image_composite(image, composite_image, offset, gravity, : rsession: unable to get registry ID `cache:hosts' @ error/registry.c/GetImageRegistry/202
#159
guanyuanm
closed
1 year ago
2
dbl p-values result in error: "p values must all be numeric"
#158
johnsonra
closed
1 year ago
1
I am having an issue with pin_name_path
#157
DrJoshVandenbrink
closed
1 year ago
5
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