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egeulgen
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pathfindR
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
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Error in input_testing(sig_EtOH_data, 0.05) : p values must all be numeric
#155
jhranitz
closed
1 year ago
4
Color-blind friendly coloring
#154
richardcoca
closed
1 year ago
1
Error in pathfindR with finding gene set
#153
richardcoca
closed
1 year ago
4
Error producing HTML file
#152
lucasrocmoreira
closed
1 year ago
1
enrichment_chart() function take too long to respond
#151
IamYimo
closed
1 year ago
3
ensembl ID instead of gene_symbol
#150
asdfjohnny1
closed
1 year ago
1
pathfindR using proteomics data
#148
lyons89
closed
1 year ago
3
Visualization
#147
Elseedy28
closed
1 year ago
1
n_processes and iterations (How to block memory/CPU in the cluster)
#146
Nitin123-4
closed
1 year ago
1
Cannot find the logo file
#145
fazeliniah
closed
1 year ago
12
issue in input_testing
#144
dnarna909
closed
1 year ago
1
Release pathfindR 1.6.4
#142
egeulgen
closed
1 year ago
0
Duplicated factor level when creating term_gene_heatmap
#140
Dane-Z
closed
1 year ago
12
More options for cluster plot
#139
lardenoije
closed
1 year ago
0
error in using pathfindR package.
#138
Mahla-As
closed
1 year ago
1
Ability to set Background geneset
#137
Rohit-Satyam
closed
1 year ago
2
failed to extract KEGG image path from response. Cannot download PNG file: NA
#131
Vinalti
closed
1 year ago
2
Making STRING Db for Plasmodium
#130
Rohit-Satyam
closed
2 years ago
1
Error "p values must all be numeric"
#129
ALSL2022
closed
2 years ago
2
KEGG pictures were not colored
#128
powerhorse1986
closed
2 years ago
2
Fail downloading png file from KEGG
#127
powerhorse1986
closed
2 years ago
1
Term Gene Graph colours opposite to term visualisations
#126
andy-shaps
closed
2 years ago
1
visualize_hsa_KEGG fails to color proteins according to fold change
#125
apelin20
closed
2 years ago
6
Issue with KEGG server connection when running pathfindr
#124
junli1988
closed
2 years ago
1
Error: Failed to extract KEGG image path from response.
#122
ashviyer
closed
2 years ago
2
Issues with KEGGgraph and retrieving KEGG pngs
#121
apelin20
closed
2 years ago
6
Question: Meaning of fold enrichment
#120
dalhoomist
closed
2 years ago
2
Unchanged genes marked as light green in pathway visualization
#119
B-McBean
closed
2 years ago
1
run_pathfindR error: helvetica
#117
adamxmiranda
closed
2 years ago
1
Deciding the most useful result output
#114
YunielFM
closed
2 years ago
1
Legend title in the term_gene_heatmap
#112
zillurbmb51
closed
2 years ago
2
run_pathfindR function frozen
#111
sophie-harrington
closed
2 years ago
2
error: Java version not detected: M1 MacMini OSX Monterey
#109
akhst7
closed
2 years ago
2
Reproducible results
#108
lardenoije
closed
1 year ago
2
Fixed typo and clarified description
#107
lardenoije
closed
2 years ago
0
Release pathfindR 1.6.3
#106
egeulgen
closed
2 years ago
0
In file(con, "wb") : cannot open file
#99
DLGisch
closed
2 years ago
2
Error in file(con, "w") : cannot open the connection
#98
evofish
closed
2 years ago
15
Release pathfindR 1.6.2
#97
egeulgen
closed
2 years ago
0
Unable to Read Font "helvetica"
#96
evofish
closed
2 years ago
5
Color bar not showing up for term_enrichment_graph
#95
cristanchoa
closed
2 years ago
1
Error with term_gene_heatmap and UpSet_plot
#94
cristanchoa
closed
2 years ago
5
installation of package ‘pathfindR’ had non-zero exit status / Error: callr subprocess failed: Invalid parent_resolve callback
#93
yotammarton
closed
2 years ago
4
Error in run_pathfindR command involving a term_visulisation not being found
#90
Tommy0398
closed
2 years ago
2
filtering the input genelist
#89
nfancy
closed
3 years ago
1
R session aborted, R encountered a fatal error
#88
caonetto
closed
3 years ago
2
Duplicated kegg term descriptions cased plot_scores error.
#87
zhuhenan
closed
3 years ago
1
Mouse database
#80
pekjoonwu
closed
3 years ago
1
Directionality of Fold_Enrichment value
#79
amanda-hi
closed
3 years ago
2
Problem with samtools : dyld: Library not loaded: @rpath/libcrypto.1.0.0.dylib
#78
cguetta
closed
3 years ago
2
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