Bioconductor AnnotationForge issues

Bioconductor / AnnotationForge

Tools for building SQLite-based annotation data packages

https://bioconductor.org/packages/AnnotationForge

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issues

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is.atomic(NULL) is FALSE now

#58 antalk2 opened 1 week ago
0
First pass at removing biomaRt

#57 grimbough opened 3 months ago
8
Error in .makeOrgPackage(data, version = version, maintainer = maintainer, : All elements of '...' must have unique names

#56 liuliang577 closed 3 months ago
1
i get the failed to remove file, permission denied error while analysing micrroarray data

#55 Peter97221 closed 6 months ago
1
makeorgdb，提示错误Warning message: In file.remove(dbFileName) : cannot remove file './/org.My.eg.sqlite', reason 'Permission denied'

#54 Frybank closed 1 year ago
7
Package from AnnotationForge is not available for this version of R

#53 phancanhtrinh closed 1 year ago
2
Repeat building of makeOrgDbFromNCBI is significantly slower

#52 lshep closed 6 months ago
5
Add RUnit to Suggests

#51 jwokaty closed 1 year ago
0
"The 1st column must always be the gene ID 'GID'" error in makeOrgPackage

#50 LichengXX closed 6 months ago
1
timeout adjustment not respected

#49 lshep opened 1 year ago
24
Error in MakingNewAnnotationPackages vignette

#48 amanda-hi closed 1 year ago
1
Error in making organism database using makeOrgPackageFromNCBI() function

#47 Anisha-gupta04 opened 1 year ago
6
Optimizations and allow specification of the desired Ensembl release

#46 knokknok closed 1 year ago
11
Unnecessary queries?

#45 knokknok closed 1 year ago
6
Why are all the calls to Ensembl set to version 80?

#44 knokknok closed 1 year ago
2
Sqlforge rnw

#43 villafup closed 1 year ago
1
Making new organism packages rnw

#42 villafup closed 1 year ago
1
Convert makeProbePackage.Rnw to makeProbePackage.Rmd

#41 mcarlsn closed 1 year ago
1
Error using makeOrgPackageFromNCBI()

#40 MarttaLG opened 1 year ago
4
Error when running makeOrgPackage (unable to Populate gene_info table)

#39 C2051 closed 1 year ago
2
makeOrgPackageFromNCBI error when creating an annotation package

#38 gljivaer closed 1 year ago
0
Error: Could not connect to database: unable to open database file

#37 yangskyfucker closed 1 year ago
1
makeOrgPackage: out of memory

#36 yanpd01 closed 1 year ago
5
Error in h(simpleError(msg, call)) while trying calling makeOrgPackageFromNCBI()

#35 lananh-ngn closed 2 years ago
3
No gene can be mapped

#34 shiyi-pan opened 2 years ago
2
makeOrgPackageFromNCBI: Error in h(simpleError(msg, call))

#33 phoebee-h opened 2 years ago
0
.get_file() helper in MakingNewAnnotationPackages.Rnw not working

#32 hpages closed 2 years ago
2
Populating genes table: Erreur : database is locked

#31 TSolDour closed 10 months ago
4
makeOrgPackageFromNCBI: Ensembl site unresponsive, trying useast mirror

#30 lshep closed 2 years ago
1
How to add description with makeOrgPackage

#29 phoebee-h closed 2 years ago
5
Error in FUN(X[[i]], ...) : data.frames in '...' cannot contain duplicated rows

#28 najibveto closed 2 years ago
5
update doc and message the user

#27 vjcitn closed 2 years ago
0
failure with vignette example

#26 vjcitn closed 2 years ago
1
Error in compiling package

#25 BaylorSci closed 2 years ago
3
A warning message of 'Permission denied'. How should I deal with it? Thanks very much

#24 Wull1994 closed 2 years ago
10
Fail to libaray the built package using makeOrgPackage

#23 hcph closed 2 years ago
4
connection error while running makeOrgPackageFromNCBI()

#22 Easterwoman closed 2 years ago
7
makeOrgPackageFromNCBI() error message

#21 mbxds5 closed 2 years ago
5
Error accessing url

#20 npokorzynski closed 2 years ago
4
Input file to include KEGG pathway

#19 xie186 closed 2 years ago
1
goTable' GO Ids must be formatted like 'GO:XXXXXXX'

#18 najibveto closed 2 years ago
3
makeOrgPackageFromNCBI never finishes

#17 npokorzynski closed 2 years ago
3
Forge OrgDb package

#16 imalsoft9 closed 3 years ago
1
`org.Hs.eg.db::org.Hs.egPFAM` errors with `cannot coerce type 'closure' to vector of type 'character'`

#15 lgautier closed 2 years ago
2
makeOrgPackage - ERROR: Two fields in the source DB have the same name.

#14 javier-pardodiaz closed 3 years ago
5
problem with gene2unigene

#13 ldr89 closed 4 years ago
4
Error in bmRequest: Internal Server Error (HTTP 500) when calling markeOrgPackageFromNCBI()

#12 janstrauss1 closed 4 years ago
2
Error when running makeOrgPackageFromNCBI() from vignette

#11 janstrauss1 closed 4 years ago
4
Database created by makeOrgPackage() "not available for R 3.6.3"

#10 niahughes closed 4 years ago
2
How to deal with KEGG Pathway annotation with replicates

#9 guokai8 closed 3 years ago
1