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churchmanlab
/
genewalk
GeneWalk identifies relevant gene functions for a biological context using network representation learning
https://churchman.med.harvard.edu/genewalk
BSD 2-Clause "Simplified" License
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Update URLs to HTTPS
#74
bgyori
closed
1 month ago
0
extending to KEGG
#73
lli-rice
closed
1 month ago
1
Add .readthedocs.yaml file
#71
ri23
closed
1 year ago
0
Problem with genewalk
#70
damhanalla
closed
1 year ago
0
Update2023
#69
ri23
closed
1 year ago
0
AttributeError: module 'typing' has no attribute 'NoReturn
#68
ri23
closed
2 years ago
3
Use comment instead of skiprows when loading GOA
#61
bgyori
closed
3 years ago
0
GO annotations file comment rows have changed
#60
bgyori
closed
3 years ago
1
Code for regulator/moonlighter plots
#49
npokorzynski
closed
3 years ago
4
Mouse ids are not working with genewalk?
#48
Anara2018
closed
3 years ago
1
Limit gensim version to < 4 for compatibility
#47
bgyori
closed
3 years ago
0
Error when calling word2vec: unexpected keyword argument 'size'
#46
ri23
closed
3 years ago
2
GO Terms
#45
npokorzynski
closed
3 years ago
1
Trouble Using GeneWalk
#44
SinjaFan
closed
3 years ago
2
Test CLI directly
#43
bgyori
closed
3 years ago
0
INDRA script generation
#42
xandmac
closed
3 years ago
2
Enable GeneWalk to run on non-human-mapped gene IDs and networks
#41
bgyori
closed
3 years ago
0
Extend support for custom SIF input networks
#40
bgyori
closed
3 years ago
0
Test with and without INDRA
#39
bgyori
closed
3 years ago
0
Add support for rat gene lists using RGD
#38
bgyori
closed
3 years ago
0
No regulators identified?
#37
npokorzynski
closed
3 years ago
4
Integrate HGNC resources
#36
bgyori
closed
3 years ago
0
Add rows for genes with no GO annotations to results spreadsheet
#35
bgyori
closed
3 years ago
0
IndexError: list index out of range
#34
eskederks
closed
3 years ago
2
Criteria for barplot output
#33
npokorzynski
closed
3 years ago
8
AttributeError: type object 'object' has no attribute 'dtype'
#32
vertesy
closed
3 years ago
2
Install issue
#31
npokorzynski
closed
3 years ago
8
network source file
#30
amitpande74
closed
3 years ago
4
Illustration of the GeneWalk network
#29
izu0421
closed
3 years ago
4
Installation failed.
#28
alhafidzhamdan
closed
3 years ago
6
Rat genome
#27
amitpande74
closed
3 years ago
1
rdflib=4.2.2 and python 3 version conflict
#26
tmargus
closed
3 years ago
2
ML
#25
Vashar20
closed
3 years ago
1
Don't download all resources up front
#24
bgyori
closed
3 years ago
0
Add end-to-end test for CLI
#23
bgyori
closed
3 years ago
0
Plotly
#22
ri23
closed
3 years ago
0
Generate plots for results
#21
bgyori
closed
3 years ago
0
Increase Python version requirement and move testing
#20
bgyori
closed
3 years ago
0
Adapt to INDRA v18
#19
bgyori
closed
3 years ago
0
Entrez
#18
johnbachman
closed
4 years ago
0
ensembl_id
#17
marttine
closed
4 years ago
1
Error while downloading resources - PathwayCommons11.All.hgnc.sif.gz
#16
leiendeckerlu
closed
4 years ago
7
compiling the resource folder - error
#15
jrconner16
closed
4 years ago
8
Importing the numpy c-extensions failed.
#14
gitpycode
closed
4 years ago
0
Handle Ensembl ID suffixes and error if ID mapping failed
#13
bgyori
closed
4 years ago
0
Ensembl IDs with dots cause problems
#12
chrarnold
closed
4 years ago
4
Start testing on Travis
#11
bgyori
closed
4 years ago
0
Visualization of the results
#10
chrarnold
closed
4 years ago
7
Fix handling Ensembl IDs in perform statistics
#9
bgyori
closed
4 years ago
0
KeyError: 'ensembl_id'
#8
chrarnold
closed
4 years ago
3
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