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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1291
BA.2.86.1+
C7420T,T22846C, T24378C(rev), T24990C(rev), T25207C(rev),C25416T, A26275G, C26529G(rev), T26681C(rev), T26833C(…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/914
EG.5.1.1+T29625C(Orf10:F23S rev)+C15981T,T24903C(S:I1114T)
EG.5.1.1--anything non-EG.5
Breakpoint before 25573 and 29624…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1177
JN.1.4+C27810T(rev), G27915T, T28297C, C28846T, A28958C(rev)
Orf7b:L19F(rev)
Orf8:G8*
Orf9b:I5T
N:K229Q(rev)
JN.1.…
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Defining mutations:
XBB.1.16.11>T25496A (ORF3a:I35K)>C14925T>C26151T>A5553G (ORF1a:K1763R = PLPro_K200R)>C1722T (ORF1a:A486V), A22108C (S:K182N)
GISAID query: A5553G, A22108C, T25496A
Earliest se…
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Setup the Default behavior of submitting to all repos to be GISAID -> NCBI in order to first capture the `EPI_SEQUENCE_ID` assigned by GISAID and then adding to GenBank Structure Comment field like:
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nbx0 updated
9 months ago
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HK.3+C12415T+C17397A+C2395T+C26534T+G23587C(S:Q675H)
GISAID query: C2395T,C26534T,G23587C
No. of seqs: 7(China-Shanxi 4 Japan 1 USA 2)
6 on GISAID, 1 USA seqs not. OR710705.1
4/257 of Shanx…
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From branch 2 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1135
JN.1+C21846T(S:T95I)
GISAID query: -11747,-C1060T,C21846T,T3565,A6183G,-26894,-6813
No. of seqs: 27(Austri…
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At some point (possibly associated with the migration, not sure) this problem came up recently. There are about 150 sequences in the fasta but doesn't have associated metadata in the database. The lis…
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_First spotted by @ryhisner_ (Edited)
JN.3.1+C8836T,G22927T(S:L455F)
GISAID query: C8836T,G22927T,G24328C
No. of seqs: 2(Spain)
EPI_ISL_18518960, 2023-10-23
EPI_ISL_18664676, 2023-11-26
…
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This is the 5th non-singlet recomb of BA.2.86*. I thought it was a singlet but @FedeGueli found there's already one being removed by usher.
![image](https://github.com/sars-cov-2-variants/lineage…