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I'm trying to do bbknn with my own single-cell data and demo data, but kernals died every time when I doing whatever my own data or demo data.
Is this because of my device? or?
sc.settings.verbosi…
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...
Hi all, thanks for the great package!
Heads up: I'm new to cellrank and I am not very experienced in python either.
I followed these tutorials: [CellRank Meets RNA Velocity](https://cel…
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Hi, this is a random person who got this repo in github recommendations.
Comment1: cool and nice, but ungzipped matrix market is a very expensive option. Comparison with gzip is more valuable IMO
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see https://czi-sci.slack.com/archives/C023Q1APASK/p1716245770988479 for reference.
# Schema changes
[...]
#### Census table of CELLxGENE Discover datasets – `census_obj["census_info"]["datas…
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Hi scDRS team,
I got the following error message. Please let me know how to resolve this.
Thank you.
Ka Yi
```
scdrs compute-score \
--h5ad-file NAc.combinded.h5ad \
--h5ad-specie…
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The `get_data` function is the foundation of many sample data functions. Its failure made a lot of test cases failed too.
When running the `get_data` function, I got the following errors.
Not…
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Hi all
I follow the Installation (https://docs.scvi-tools.org/en/stable/installation.html)
```bash
mamba create -n scvi-env python=3.9
mamba activate scvi-env
mamba install pytorch torchvision to…
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Connect with [ScPerturb](https://github.com/sanderlab/scPerturb) datasets
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Dear authors, we would like to test the performance of scTab for predicting cell type labels. I have followed the model_inference.ipynb notebook with the dataset used in the tutorial. I now have the l…
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Hello everyone,
I am trying to visualize the file SS200000135TL_D1.h5ad (https://db.cngb.org/stomics/datasets/STDS0000234) in Rstudio using Seurat.
In order to be clear, what I did is:
1) Dow…