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Hi, I am trying to run quant3p with the following command:
quant3p -n ATG5 -g [genome annotation file] *.bam
,but I keep getting the following error
pkg_resources.DistributionNotFound: quant3…
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Hello,
I am trying to install bcbio on Temasek Life science HPC in Singapore and got the below error,
The following packages will be DOWNGRADED due to dependency conflicts:
fontconfig: …
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Paired-end and stranded designations are currently boolean flags, but this doesn't capture some of the necessary information for bioinformatics processing tools.
Some useful refs:
https://www.bios…
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Hi @yhoogstrate,
I was wondering if there are any plans on porting this to make it at least Python 3 compatible? I'm planning to use this in a soon-to-be released pipeline, but a portion of the pipel…
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I'm very new to linux and installs such as this, sorry if this is a silly question, I do feel like I'm missing something obvious. I keep getting a conda lock error. I've tried installing multiple time…
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Some patients have gene expression quantification for only a tumor sample while others also have a paired normal tissue sample. In the latter case, both files are returned with no indication of which …
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Hello there, I have some ideas of modules to add that could be really easy for you to code.
-HTseq-count, which is pretty much the same thing as featureCount, but a slightly different output file.
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Could FeatureCounts be added to Main?
FeatureCounts performs the same task as htseq-count, but is much much faster. We include FeatureCounts in the RNAseq tutorial @malloryfreeberg and I are creat…
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Hi. Thanks for creating this tool. I'm trying to do an analysis from a pre-print on some scRNA-seq data and I think UMI Tools might be appropriate.
Here is the paper: http://biorxiv.org/content/ea…
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Dear @bioconda/all,
this is a small announcement to let you know that we succeeded in creating an very efficient Linux container for every\* Bioconda package. Yes, there are now 1338 [Docker](https:/…