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I've encountered an odd issue as we've begun to use this software more and more. We have a password in the list below it's `data.credstash_secret.redshift_password` that is 64 characters long. We can…
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When working with either very large merged_nodups files or building hic files with higher resolutions such as 1000bp or 500bp, juicebox pre(and/or CLT in general) fails like this:
.Exception in threa…
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Upon display in Juicebox, the first row of a headerless 2D annotation bedpe is absent.
Tested and reproduced in Juicebox_1.8.8.exe + Juicebox_1.9.8.exe.
The same issue is not present in Juicebox.js
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### We need a gallery script to display multiple images nicely on the Entry page.
When users drag a File Upload field into the Image drop zone, if Multiple Files is selected, then they probably expec…
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Where do I find the CPU version of the Juicer tools? It seems all the downloads are for CUDA.
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On Frankenstein with 20GB RAM initialization
INFO [2016-03-02 14:29:41,491] [GenomeManager.java:130] [pool-1-thread-1] Loading genome: http://igvdata.broadinstitute.org/genomes/mm9.genome
INFO [201…
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Hi,
Many thanks for making this toolset available.
I'm trying to run fanc compartments on my dataset. If I got it right, I should first convert my Hi-C analysis output into fanc input using fanc a…
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Splash BMP updated for Juicebox.exe
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Juicebox tutorial needs to be updated. Also there are some broken images on it.
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This issue is for general discussion of treatment supplementary alignments (bam tag 0x800 & SA tag). See also #277 for discussion of connecting supplementary alignments. @amwenger @pb-jchin @cwh…