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Hello there, using the sample dataset I run the test run in order to see if all works, but not.
Here the command and the output i get:
> ./tools/bin/bpipe` necklace.groovy data/data.txt`
WARNING…
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Hi Derrick,
We talked about this topic during 2014 and I know you are working on it. I'm very excited to see you released a new kraken version! I really think kraken could be one of the best solution…
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Hi,
I'm running the following mm2 command using 2 different indices -
```
minimap2 -t 96 -K8g -cx ava-ont -k25 -w17 -e200 -r150 -m4000 -z200 --dual=yes index.fastq reads.fastq -Y
```
case 1…
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Hi,
quick question, would this also work on nanopore data (10.4 flow cells)? what would be the optimal settings to run ska2 on?
thanks!
Pieter
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Hi John,
I'm trying here to use popPUNK to classify 125k Mtb genomes.
**Versions**
poppunk 2.6.5 installed with Conda
**Command used and output returned**
sketchlib sketch -l list_files_pop…
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Credit @luukromeijn
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## Question
Hi Seqan-Team,
I just recently read about XOR Filters and that they were superior to Bloom Filters in regards to memory usage and query time. Do you plan (or maybe already started) t…
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It would be useful to have functionality to jointly estimate R and k using the functions in `likelihoods.R`. Perhaps as a starting point by using simple profile likelihood methods similar to the ones …
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**Q:**
Haphic is very convenient for processing Hi-C data.
We combined the data of two haps together and then processed it with haphic. The resulting Hi-C heatmap shows some strong interactions bet…
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I tried to index the human genome ( I know I can download it) using the command given in your README.
```
wget https://ftp.ensembl.org/pub/release-108/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.d…