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So, i have an organism and i want to download all the chemical compounds related to that organism with their smile ID and the species that produce those chemical compounds.
So what i did was just s…
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Based on the growth rates we were seeing, Daniel asked if there is a maintenance reaction in the model, I wasn't sure.
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![image](https://user-images.githubusercontent.com/1334004/206553181-ef975021-104d-4588-99d3-85e622b4de1b.png)
From Chris:
> mass spec is a method. not a data item
> and fuzzy, as mass spec can…
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We just want the model to grow so that we can estimate CUE again.
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In the metabolism production column, there are values of yes and no alongside the metabolites. I thought this meant if the metabolite was produced or not by the bacteria, but I wasn't able to get conf…
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In the case of requests with 0 responses, consider passing this response to the frontend instead of returning a 404 from the API. See original thread https://github.com/MetabolicAtlas/MetabolicAtlas/p…
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Hi Adriano,
I was running timaR smooth until the spectral matching step, where `snow` package seems to be absent and causes the workflow to stop. `timaR` package is well loaded, and I also manually…
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In the #next branch:
Using ```convert(JSONModel, model)``` produces a json file with the first line ```{
"json": {
"metabolites": [```, but escher doesn't recognise this format, it wor…
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### Description of the issue:
Error in loadGSC("/mnt/workspace_dierickx/kcui/mouse-gem/Mouse-GEM/model/Mouse-GEM.xml") : no gene association found
Hi,
I am using mouse-GEM model. I load xml fil…
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mwTab breaks down into a few sections and most of the fields in those sections can be represented simply with key value pairs. Most of the schema in the mwTab package are simple dictionaries. For thos…