SysBioChalmers Mouse-GEM issues

SysBioChalmers / Mouse-GEM

Genome-scale model for Mus musculus

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issues

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How to generate the Mouse-GEM.xlsx

#26 ErikaKvalem opened 3 months ago
1
evalGeneEssentialityPred erro

#25 zrf492174 closed 11 months ago
9
no gene association found in xml model

#24 Kai6662 closed 1 year ago
13
Mouse 1.4

#23 haowang-bioinfo closed 1 year ago
0
prepHumanModelForftINIT error

#22 byeongchangsim closed 1 year ago
28
CHEBI:8100 in wrong column in metabolites.tsv

#21 SchSascha closed 1 year ago
2
Acod1(Irg1) gen is missing

#20 SlowinskiPiotr closed 1 year ago
10
Mouse 1.3.1

#19 JonathanRob closed 1 year ago
0
Fix: only annotate model before SBML export

#18 JonathanRob closed 1 year ago
2
rxnFrom and metFrom fields are empty

#17 JonathanRob closed 1 year ago
0
.mat model should not contain full annotation information

#16 JonathanRob closed 1 year ago
2
feat: use `tsv` file to archive ortholog pairs

#15 haowang-bioinfo closed 1 year ago
3
Mouse 1.3

#14 haowang-bioinfo closed 2 years ago
7
metabolite Identifiers are not in the COBRApy-parsed Mouse-GEM.xml

#13 gmhhope closed 2 years ago
4
It seems the annotation is empty in Mouse-GEM - causes problems in addRxns

#12 johan-gson closed 2 years ago
7
Inactivate human biomass reaction (MAR13082) by default

#11 JonathanRob closed 2 years ago
2
Empty gene names in the xml version

#10 OmarAshkar closed 1 year ago
13
style: normalise line endings, include citation and rename branches

#9 haowang-bioinfo closed 2 years ago
0
Mouse 1.2

#8 haowang-bioinfo closed 3 years ago
0
Mouse 1.1

#7 haowang-bioinfo closed 3 years ago
4
style: align with `standard-GEM` template v0.5

#6 haowang-bioinfo closed 3 years ago
0
review .standard-GEM.md file

#5 mihai-sysbio closed 2 years ago
2
Mouse 1.0

#4 haowang-bioinfo closed 3 years ago
1
feat: add model generation code

#3 haowang-bioinfo closed 3 years ago
2
feat: add data

#2 haowang-bioinfo closed 3 years ago
1
feat: update README

#1 haowang-bioinfo closed 3 years ago
0