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http://beta.monarchinitiative.org/about/monarch#analysis
Following the links from the footer of this page, both Gene Ontology and Disease Ontology go to broken pages.
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https://github.com/monarch-initiative/ExomiserSimulations/blob/a52fe4e8ddaee8bc9ced9c2508b2d09bdd170894/plain-threes/src/main/java/org/monarchinitiative/exomiser/simulations/plain_threes/commands/Simu…
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At the last hackathon I tried to load https://data.monarchinitiative.org/ttl/clinvar.ttl (which is 1.2 GB) into a networkx graph with ObanRdfTransformer, and got an exception that I believe means I ra…
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Create a new page in the Monarch beta site to hold the text currently available on the monarch-app page https://monarchinitiative.org/page/disclaimer. The code lives here https://github.com/monarch-in…
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Our uptime URL is currently returning a 500:
https://api.monarchinitiative.org/api/bioentity/gene/NCBIGene:3630/homologs/?homology_type=O&fetch_objects=false
An exception occurred: search_associat…
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The monarch solr provides frequency and age of onset qualifiers for disease to phenotype associations, this should be added to the biolink response.
For example:
https://solr.monarchinitiative.org…
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https://monarchinitiative.org/page/phenogrid
I'm on Safari, was exploring Monarch, and wanted to see what phenogrid would do. Never loaded.
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Theres a drop in variant data in the latest ingest of flybase:
https://archive.monarchinitiative.org/201801/ttl/flybase.nt
Edges (only indexed edges, all sources):
is_expression_variant_of: 16869…
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E.g. https://alpha.monarchinitiative.org/disease/MONDO:0007947#phenotype
This should show frequency, onset, modifiers, etc
May need a biolink-api ticket - if added, then link to this project
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I've executed as the below command.
java -Xms2g -Xmx4g -jar exomiser-cli-11.0.0.jar --help
When executing this command, I got the error message.
17:23:40.472 [main] INFO org.monarchinitiative…