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Hi,
I am using the new version of MRtrix to perform the tractography in optic radiations pathways. We designed a post-processing method based on cluster level and anatomical information in order to a…
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Thijs is yelling in my ear and won't let me go home until I write this up...
So he ran into a few understanding hiccups on figuring out MRtrix3's image access classes, and got me wondering about whet…
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Dear mrtrix experts,
I am struggeling with the screencapture in mrtrix3.
1.
It used to be possible to capture a whole stack of screen shots in say the axial orientation. What do I have to do in mrtr…
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I have some nii files with transform not ident, so I need to rotate the DW_scheme to match mrtrix convention.
Would be nice if the DW_scheme could be automatically corrected when converting from nii/b…
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Kerstin originally reported this one, but I've finally been able to reliably reproduce the error and therefore bug hunt.
So the initial problem was that the SF mask output from `dwi2response` was inc…
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I just cloned the master branch for the 0.3 version and tested a strange behavior from csdeconv in mrtrix 0.2
From my understanding, mrtrix always use the information from the affine matrix at every …
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Dear mrtrix3 experts,
I have a DWI data set with multiple shells at b={1000,2000,3000}. Is was already processed via FSL topup/ eddy.
I tried to run the following command:
dwi2response -force -info…
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Not sure if this is an MRtrix issue or FSL issue, but FSL is struggling with nii files converted using mrconvert, throwing an error "inconsistent sform and qform information in file".
It worked fine w…
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This is needed to account for the different coordinate system used by flirt - see [discussion on Google+](https://plus.google.com/108401659717037510983/posts/bNN9fj3zHMH) for details.