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Hello,
Windows has [an unfortunate limitation for command line execution](https://stackoverflow.com/a/28452546), which at some point becomes problematic when processing many data files with e.g. `F…
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Hi Lori,
I would like to cache files from a public repository of mzML (raw mass spec data files) using `BiocFileCache` but it doesn't work because many of these files contain white spaces in their …
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### Description of the bug
Error executing process > 'NFCORE_QUANTMS:QUANTMS:FILE_PREPARATION:MZMLSTATISTICS (20220508_EXPL2_Evo7_OOE_DIA21min_InS_R_01_5uL_c_022)'
Caused by:
Process `NFCORE_QU…
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- Describe the issue or question:
Hi Fengchao,
I had a problem of 'EasyPQP convert error' when I was going to generate spectral library. I have checked previous issues about this problem, but I do…
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Hello @cbroeckl and all,
I know I already asked about it, but want to double check.
I am working with Waters MS/MSe data, which I converted into mzML format keeping all three channels in, so my…
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- Describe the issue or question:
I cannot find pep. XML file in the result output files. How do you locate other files like ion.tsv, pep.tsv, protein.tsv and psm.tv.
Here is my log file
CheckC…
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- Describe the issue or question:
Hi Nesvilab,
I want to generate DDA spectral library without DIA data. Fragpipe ran on linux HPC and used DIA-SpecLib_Quant workflow. All Thermo.raw files were co…
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Apologies if this issue has already been sorted in any other threads, but I could not find it.
I have been trying to run a standard open search with 3 mzml files generated using MSConvert from .raw…
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I am currently using MetaproSIP to benchmark my 25% 13C labeled E. coli peptide mass spectra data. I used the unlabeled peptide feature XML from an unlabeled search, as the MS2 search engine of OpenMS…
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Hello, I get this error trying to run the linux command line version of DiaNN. I'm running Ubuntu 22.04 inside a Docker with 64 cores and 64 GB RAM. As a note, this same raw file and configuration run…