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Hello nnUNet Community,
I am working on a segmentation task involving four labels: background (0) and three distinct objects (1, 2, and 3). In my dataset, labels 2 and 3 can overlap. The segmentati…
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## 1) Context
After training an nnUNet model on 18 subjects from [ds004507](https://openneuro.org/datasets/ds004507/versions/1.0.1) as described in [issue#7](https://github.com/ivadomed/model-spinal-…
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Hi! When I run `! TotalSegmentator -i patient2/ -o segmentations`
I get the following error:
Traceback (most recent call last):
File "/usr/local/bin/TotalSegmentator", line 8, in
sys.ex…
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We have RGB channels in the raw data:
https://github.com/axondeepseg/model_seg_rabbit_axon-myelin_bf/blob/6435da6161f21032884db593b21a3b94c95c1b6e/nnUNet_scripts/prepare_data.py#L30-L43
This is …
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```
RuntimeError: Could not find the model trainer specified in checkpoint in nnunet.trainig.network_training.
If it is not located there, please move it or change the code of restore_model.
Your…
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Hi Jakob,
thanks for your great contribution. I have been evaluating the TotalSegmentator weights on the released public dataset, as there are minor differences compared to your test data. The pr…
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I am trying to train with my grayscale CT images containing only 1 channel, but it seems like the reader still reads it as RGB channels. So, I am wondering if the model support 1 channel grayscale png…
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My name is Yeonjin Jang from Yonsei University in Korea.
I’m studying auto-segmentation using TotalSegmentator.
When attempting to execute the program via Python API, I faced an error as follows. …
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Hello, your work is a great one. I'm having some problems with my experiments: Using my own configuration of the network, the results of the two replicates of the experiment differed by three percenta…
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Please read the following resources before posting issues:
Common questions:
https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/common_questions.md
Common Problems and their solutions…
fyb99 updated
9 months ago