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Dear phylophlan team,
I've installed PhyloPhlAn 3 from conda, and run the following command:
> phylophlan -i /home/mwa/input_phylophlan -t a -d phylophlan -f supermatrix_aa.cfg --diversity medi…
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Hello, I got some scRNA-seq data for a non-model species
and I want to used SATURN to do the annotations for this dataset comparing to the human scRNA-seq atlas.
According to the tutorial, there …
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**Is your feature request related to a problem? Please describe.**
Creating a Topology requires you to provide bond orders and formal charges. Sometimes that information is not available, like when …
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Edit: No Idea how I can add Labels...
Hey,
I dug up some stuff from BirdNET
It is really important that the user of BirdNET-Go can set the locationFilterThreshold for themselves!
See line…
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Hi, I am running the python version of cytotrace.
Here are some advice and some problems to report.
1. the imput was a file path. And the expression matrix was transversed in the `load()` script. an…
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Was trying a simple test locally on M2 MacBook, call:
python eval_single_anndata.py --adata_path chicken_heart.h5ad --dir res --species chicken
Using sample 4 layer model
**********************…
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I am performing analysis on a non-model species, and I encounter a "core dumped" when creating an arrowfile. I'm not sure what could be causing this, and I haven't found any error information in the …
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I have mentioned this a few times before but I believe it would be best to leave this as a long term standing issue: Can the S4 drugs kill other pathogens besides Plasmodium falciparum? (Also, do thes…
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The json template to send as `"guided_json"` in the request to oai api of vLLM/Aphrodite:
```python
json_template = {
"type": "array",
"items": {
"type": "object",
"prope…
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Previously we have been encouraging the use of the INSDC set of null terms when required:
| term | definition |
| ----- | ---------- |
| not applicable | information is inappropriate to report,…