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The Bio-Formats documentation lists three ways to interface Bio-Formats from Python. See here:
https://docs.openmicroscopy.org/bio-formats/6.8.0/developers/python-dev.html
Those three ways are:
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Please edit this markdown table to add potential HTAN validation rules that would improve data uniformity and user experience.
| Parent | Element | Effect | Rule/Regex | Issues/PRs |
|:-:|:-:|:-|:…
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Now that NDTiff has been added as a possible save format, how are we going to answer user questions about the difference, or which one should be selected by default?
Do we want to promote the use of …
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Hi!
We have a lot of our data on network drives mounted under `/mnt`.
It would be cool if those were accessible from the Flatpak as well, so would it be possible to relax the sandbox permissions a b…
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Hi so my MCD file is not able to be processed with the IMC jupyter pipeline.
1) i can view the MCD file in MCD VIewer.
2) the jupyter notebook can process the ImcSegmentationPipeline Patients1, .…
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Hello,
I have recently learned about valis for image registration and I tried to use it on 2 images with different stains to register the AT8 image to the reference H&E image. However when It comp…
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Firstly, thank you for developing this library. It looks very promising. Secondly, apologies for posting this question in the issues section. I would like to ask if the library supports deformable reg…
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## Description
OpenSlide sample image from here: https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/JP2K-33003-2.svs
Does not load, long backtrace ending up with the following error…
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Opening this issue so that there is an obvious place to find this discussion in future.
In #238, @mkcor wrote:
> Getting to the gist of this PR, I'm following up on https://github.com/scikit-ima…