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Hi @shntnu,
I just tried validating the annotation.csv file at
https://github.com/IDR/idr0125-way-cellpainting/blob/main/screenA/idr0125-screenA-annotation.csv
and this reports that there is 1 …
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### 🐛 Bug Report
If you add a Labels layer when the viewer is in 3D view with `visible=False`, the slice information will be incorrect, and it will not be updated when setting `visible=True` on the l…
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Running fractal-demos example 01 via a fresh version of fractal-containers leads to a failed job, with the traceback below.
The obvious candidate explanation is https://pillow.readthedocs.io/en/stabl…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
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Hi,
I have multiple samples in the same FOV in Xenium data. I am trying to subset each sample with `polygon_query`.
```
cropped = polygon_query(
sdata=sdata,
polygons=polygon,
ta…
Bo-UT updated
6 months ago
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Hi @keller-mark,
@lee-t and I were just playing around with pizarr and tried to use it to load some of the SpatialData example datasets from here:
https://spatialdata.scverse.org/en/latest/tutor…
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The [v0.4 spec states](https://ngff.openmicroscopy.org/0.4/index.html#image-layout):
```
# The name of the array is arbitrary with the ordering defined by
# by the "multiscales" metadata, but is …
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Currently, when the user fileshare runs out of space, the tasks fail (with errors like the one below), but the server keeps the job status at "running".
Possible that the user isn't writing the slu…
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Main part: Read the relevant metadata from the .zattrs files into the metadata dictionary, should require very little compute.
Having it as a separate task may be the easiest first implementation. …
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Hi @tischi ,
we would like to read HCS data from [Incucyte](https://www.sartorius.com/en/products/live-cell-imaging-analysis) microscopes.
The corresponding data is stored over multiple folders, w…