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I ran searchgui to get identification files (comet, ms-amanda, msgf, omssa, and xtandem) as well as mascot, using the same uniprot yeast database with reverse decoys. I'm getting this error after all …
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This workflow [1] combines MS-GF+ and X! Tandem (Piledriver) search results using the `PEPMatrix` and `PEPIons` algorithms of the `ConsensusID` tool based on four fractions of _Sciex TripleTOF 6600_ d…
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Apparently a lot of label-free algorithms these days have a normalisation functionality for intensity throughout the run, since there is a systematic drift of intensities at different timepoints of ac…
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Hi,
since peptideshaker 1.16.0 when I try to save my projects I get the same error message:
> An error occured: E:\Tools\PeptideShaker-1.16.2\resources\matches\projectX_0_id\log\log40.dat (El si…
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For a week, I've been trying to search a rat database with an mgf file that is ~100Mb with tandem and recently my searches won't finish. I would say that in the past they ran in half an hour or less b…
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Hi, the Peptide Shaker CLI instruction website is down, for some reason. Is Peptide Shaker OK for 3-4GB Orbitrap data files?
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I am trying to use the [`runTSNE()`](https://github.com/RGLab/flowIncubator/blob/47427ed6943a8592b58375f47604d587781c6b6d/R/runTSNE.R) function, but I believe the latest `updateIndices()` function is …
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Hi,
As a new user of OpenMS/TOPP, I started with running the example pipelines. I encountered some problems with Ecoli_Identification.toppas workflow (see log below). Any ideas what's going wrong? One…
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Dear Compomics-team,
I'm encountering errors when trying to process comet.pep.xml files with peptideShaker ("""An error occurred while loading the identification files"""). I've got 54 files, but f…
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to be integrated into #124
sgibb updated
7 years ago