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Right now there are 155 database cross-references in UniProt:
- http://www.uniprot.org/database/
I want to discuss here
- [ ] which ones are essential
- [ ] a reasonable, flexible model for cross-ref…
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Is there possible to rerun a run that was manually cancelled prior? We have a very long run (large input files) that had to be cancelled (computing resource issue) and now when the same command was st…
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Hi,
I uploaded to NORTH-app a fasta file but I did not have any outliners.fasta file. When I clicked on start training to the next step
![Screen Shot 2019-04-18 at 9 02 11 am](https://user-image…
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Hi,
I find this when I run run_braker
getAnnoFastaFromJoingenes.py -g maker_out/masked_assembly.fasta.adjusted -o braker_out/308/braker_308 -t 1 -3 braker_out/308/braker_308.gff3
anaconda3/en…
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Few proteins are know to be necessary for pyrrolysine synthesis. Searching for these proteins may prevent the predition of PylProt in genome which are not able to synthesize pyrrolysine.
- [ ] List…
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Hey @samsledje !
Thanks for the great work you are doing, it's really a powerful idea to apply protein-ligand similarity search for virtual screening.
According to the results of your current stat…
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hi, could please help how to make fix length sequence?
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Hello,
I've been running the most recent Dockerized version of Trinotate. I completed steps 2, 3, and 4 as seen in https://github.com/Trinotate/Trinotate/wiki/Software-installation-and-data-require…
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Is there a way to use pyensembl for some of the other genome databases built with ensembl's code? Examples are all the sites hosted under http://ensemblgenomes.org/:
- Ensembl Bacteria
- Ensembl Fung…
xguse updated
9 years ago
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As I understand it, the cath-gemma starting clusters are currently generated in the following way:
- Get all sequences from latest version of Gene3D (here it is v16) for each CATH superfamily
- Ge…