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### Publication and Data Information
https://www.nature.com/articles/s41438-020-0300-x
### Additional Information
### Checklist
See [New Genome Documentation](https://github.com/mestato/stat…
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Hi,
When I run the srnadiffExp() I got warning message as below:
```
.. 1141080 elements found...
... Annotation step done.
Constructing object...
... done.
Warning message:
In rcpp_normaliz…
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Hello,
I've been running the most recent Dockerized version of Trinotate. I completed steps 2, 3, and 4 as seen in https://github.com/Trinotate/Trinotate/wiki/Software-installation-and-data-require…
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hi there,
I've been reading in some multiple sequence alignments, as DNAStringSet objects. They're nucleotide alignments that encode proteins. I've been playing with using 'translate', but it looks…
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Hello,
I hope you are well. I just wanted to ask regarding the background of this aforementioned error which is generating when am trying to evaluate an independent test dataset for proteins (max p…
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I want to create a db based on Prostt5, and first use SwissProt to test it, and I encounter the error "Prediction failed".
The execution command is as follows:
./foldseek createdb ./uniprot_sprot.f…
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* **UniProt KeyWord (ID and label):**
please remove
UniProtKB:Q9BQ70 | TCF25 | enables | GO:0003677 DNA binding | ECO:0007322 IEA | GO_REF:0000043 | UniProtKB-KW:KW-0238 | 9606 Homo sapiens…
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Peptides FDRs do not correspond to protein FDRs.
Currently, large-scale studies often have dozens or hundreds of LC-MS runs that are being accumulated. Repeated measurements lead to an accumulation o…
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Get SMILES for PubChem Compount (here for aspirin CID 2244):
* https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/fastidentity/cid/2244/JSON
Get AA sequence for a protein (check the sequence key)…
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Many thanks to the authors for this wonderful classifier. It works without any problems. All the files needed to work are generated.
It would be great if besides the file best_markers-step_1 would g…