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I'm trying to use NGSCheckmate on the RNA-seq data (in paired end FASTQ format) from this dataset [1] and I am getting surprising results which make me question whether I am doing the right thing. Th…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Bioconductor/TENxBrainData
Confirm the following …
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I noticed there are two reference options. one is hs and another is dm. Are they for human and mouse?
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Hello,
I would like to request a new term for small RNA (sRNA). They are
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I used web-search to search for accession AP011496.1 (RF02547 : mtPerm-5S) and the sequence matched all the families in the LSU clan apart from the 5S RNA family I took the sequence from.
The famil…
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For the nodes populated for PTN000271860, I am wondering whether the transcription factor terms are appropriate. This is a subunit of HAT complexes, rather than a transcription factor per se.
Term: t…
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Following our conversation with @peastman, @rafwiewiora, and @ChayaSt last Friday, I've created a new github repo to hold the forcefield conversion code, source forcefields, automated testing harness,…
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- Potential GO term name: negative regulation of autoproteolysis
- Definition: Any process that stops, prevents or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds w…
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Here is what NCBI complained about:
I looked over your .tbl file and used it to annotate 200 of the sequences in your submission (the first 100, and then 301-400th). I had to split the fasta file l…
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I would like to request a new term for **Thermoregulator** RNAs.
### Background
These regulatory regions coordinate temperature-dependent gene expression. They are found in 5'UTRs, and their s…