parklab NGSCheckMate issues

parklab / NGSCheckMate

Software program for checking sample matching for NGS data

MIT License

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issues

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count_alt_A_C_G_T

#52 itaibeno closed 4 months ago
3
File "ncm.py", line 1453, in <module> File "ncm.py", line 222, in createDataSetFromDir ZeroDivisionError: float division by zero

#51 kbarrr opened 8 months ago
6
ZeroDivisionError: float division by zero

#50 kbarrr opened 8 months ago
0
PNG plot output for vaf_ncm.py

#49 stevekm opened 8 months ago
0
Clustering plot is a flat line now with the version 1.0.0 and 1.0.1

#48 zhujack opened 9 months ago
1
the SNP bed file for mouse?

#47 ls233 opened 12 months ago
0
Incorporate bug fixes and update version number

#46 SPPearce closed 1 year ago
16
Update ncm.py

#45 SooLee closed 1 year ago
0
Genomic locations of the SNPs in the vaf file

#44 ImNotaGit opened 1 year ago
0
Is this tool being maintained?

#43 NeginValizadegan opened 1 year ago
1
BAM data and FASTQ data were inconsistent

#42 lqsae opened 2 years ago
0
inconsistent use of tabs and spaces in indentation

#41 cv55 opened 2 years ago
0
ValueError: Substring not Found

#40 amootta opened 3 years ago
0
how to prepare the input BED file ?

#39 hmyh1202 opened 3 years ago
0
Generating binary pattern files for other tools

#38 swannyy14 opened 3 years ago
3
Update ncm.py

#37 zmiimz opened 3 years ago
0
function to start with already generated .ncm files?

#36 imcoleman opened 3 years ago
3
ZeroDivisionError: float division by zero in math.sqrt(xdiff2 * ydiff2)

#35 elagina opened 4 years ago
0
python ncm.py gives error

#34 parvathisudha closed 4 years ago
0
Cant Open Fastqs

#33 sengoku93 closed 4 years ago
0
samtools mpileup is deprecated

#32 golharam opened 4 years ago
0
Fix dataset reading and pearson correlation is 0

#31 ghuls opened 4 years ago
1
ngscheckmate2xgmml.R references non-existent R file

#30 golharam opened 4 years ago
0
Error when running create.xgmml.from.ngscheckmateout

#29 golharam closed 4 years ago
0
missing the last sample in output_corr_matrix.txt

#28 zhujack opened 4 years ago
0
Added Dockerfile

#27 medcelerate opened 4 years ago
0
Allow reference genome file location to be specified at runtime

#26 SPPearce opened 4 years ago
0
VCF files to use

#25 plbngl opened 5 years ago
1
Does this software only support python2.x ?

#24 yanglq-bio opened 5 years ago
0
bgzip vcfs

#23 robrollback opened 5 years ago
0
correlation matrix

#22 misbahch6 opened 5 years ago
0
On non-human species

#21 tderrien opened 5 years ago
0
new release?

#20 0xaf1f opened 5 years ago
1
Identical twins and NGSCheckMate

#19 ManavalanG closed 6 years ago
2
failed to run RNAseq

#18 wisekh6 opened 6 years ago
1
Float division by zero

#17 tstricker opened 6 years ago
2
TabError for ncm.py

#16 PyGuan closed 6 years ago
1
45 bases long SNPs

#15 vladsavelyev closed 6 years ago
1
Add SNP_GRCh38_hg38_wChr.bed

#14 V-Catherine closed 5 years ago
2
ZeroDivisionError: float division by zero

#13 nskbe closed 6 years ago
3
Pattern files for GRCh38

#12 anishchakka closed 6 years ago
1
Update README.md

#11 tinyheero closed 6 years ago
1
Issues with file names

#10 zhujack closed 6 years ago
2
segfault, bus error

#9 jamesdalg closed 6 years ago
2
prioritize ./ncm.conf over $NCM_HOME/ncm.conf

#8 0xaf1f closed 6 years ago
2
scripts not executable

#7 0xaf1f closed 6 years ago
1
Weird usage printout

#6 SooLee closed 6 years ago
2
RNA-seq guidance in the manual

#5 cafletezbrant closed 6 years ago
2
Float division by zero

#4 cramirezs closed 7 years ago
2
bcftools version

#3 crazyhottommy closed 6 years ago
2