parklab NGSCheckMate issues

parklab / NGSCheckMate

Software program for checking sample matching for NGS data

MIT License

126 stars 48 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

count_alt_A_C_G_T

#52 itaibeno closed 5 months ago
3
File "ncm.py", line 1453, in <module> File "ncm.py", line 222, in createDataSetFromDir ZeroDivisionError: float division by zero

#51 kbarrr opened 8 months ago
6
ZeroDivisionError: float division by zero

#50 kbarrr opened 8 months ago
0
PNG plot output for vaf_ncm.py

#49 stevekm opened 9 months ago
0
Clustering plot is a flat line now with the version 1.0.0 and 1.0.1

#48 zhujack opened 9 months ago
1
the SNP bed file for mouse?

#47 ls233 opened 1 year ago
0
Incorporate bug fixes and update version number

#46 SPPearce closed 1 year ago
16
Update ncm.py

#45 SooLee closed 1 year ago
0
Genomic locations of the SNPs in the vaf file

#44 ImNotaGit opened 1 year ago
0
Is this tool being maintained?

#43 NeginValizadegan opened 1 year ago
1
BAM data and FASTQ data were inconsistent

#42 lqsae opened 2 years ago
0
inconsistent use of tabs and spaces in indentation

#41 cv55 opened 2 years ago
0
ValueError: Substring not Found

#40 amootta opened 3 years ago
0
how to prepare the input BED file ?

#39 hmyh1202 opened 3 years ago
0
Generating binary pattern files for other tools

#38 swannyy14 opened 3 years ago
3
Update ncm.py

#37 zmiimz opened 3 years ago
0
function to start with already generated .ncm files?

#36 imcoleman opened 3 years ago
3
ZeroDivisionError: float division by zero in math.sqrt(xdiff2 * ydiff2)

#35 elagina opened 4 years ago
0
python ncm.py gives error

#34 parvathisudha closed 4 years ago
0
Cant Open Fastqs

#33 sengoku93 closed 4 years ago
0
samtools mpileup is deprecated

#32 golharam opened 4 years ago
0
Fix dataset reading and pearson correlation is 0

#31 ghuls opened 4 years ago
1
ngscheckmate2xgmml.R references non-existent R file

#30 golharam opened 4 years ago
0
Error when running create.xgmml.from.ngscheckmateout

#29 golharam closed 4 years ago
0
missing the last sample in output_corr_matrix.txt

#28 zhujack opened 4 years ago
0
Added Dockerfile

#27 medcelerate opened 4 years ago
0
Allow reference genome file location to be specified at runtime

#26 SPPearce opened 5 years ago
0
VCF files to use

#25 plbngl opened 5 years ago
1
Does this software only support python2.x ?

#24 yanglq-bio opened 5 years ago
0
bgzip vcfs

#23 robrollback opened 5 years ago
0
correlation matrix

#22 misbahch6 opened 5 years ago
0
On non-human species

#21 tderrien opened 5 years ago
0
new release?

#20 0xaf1f opened 5 years ago
1
Identical twins and NGSCheckMate

#19 ManavalanG closed 6 years ago
2
failed to run RNAseq

#18 wisekh6 opened 6 years ago
1
Float division by zero

#17 tstricker opened 6 years ago
2
TabError for ncm.py

#16 PyGuan closed 6 years ago
1
45 bases long SNPs

#15 vladsavelyev closed 6 years ago
1
Add SNP_GRCh38_hg38_wChr.bed

#14 V-Catherine closed 5 years ago
2
ZeroDivisionError: float division by zero

#13 nskbe closed 6 years ago
3
Pattern files for GRCh38

#12 anishchakka closed 6 years ago
1
Update README.md

#11 tinyheero closed 6 years ago
1
Issues with file names

#10 zhujack closed 6 years ago
2
segfault, bus error

#9 jamesdalg closed 6 years ago
2
prioritize ./ncm.conf over $NCM_HOME/ncm.conf

#8 0xaf1f closed 6 years ago
2
scripts not executable

#7 0xaf1f closed 6 years ago
1
Weird usage printout

#6 SooLee closed 6 years ago
2
RNA-seq guidance in the manual

#5 cafletezbrant closed 6 years ago
2
Float division by zero

#4 cramirezs closed 7 years ago
2
bcftools version

#3 crazyhottommy closed 6 years ago
2