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Hi,
This is not an issue, I just wanted to give you my thanks. This work is awesome!
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Many thanks, I read your RCL preprint with great interest. If there are any plans to add more wrappers, could there be a wrapper for RCL implementation in scanpy too?
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Hi Developers
I have few queries!!
First, I am trying to use Margaret for Trajectory analysis. I have Normalized and Scaled counts obtained from Seurat for single cells. For our data, we know from…
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suddenly I have this problem, maybe related to an anndata upgrade. pip says all requirements are satisfied:
scanpy==1.4.3 anndata==0.6.22rc1 umap==0.3.9 numpy==1.16.4 scipy==1.2.1 pandas==0.24.2 sc…
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I keep getting this error and i ' m not sure what is the problem . Appriciated your helps .
Package was installed.
`---------------------------------------------------------------------------
…
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Hello,
Thanks for creating this package. I've installed and trying to run the tutorial data before starting on my own data. My script is as follows:
```
# This is a Python script for running Sp…
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Current behavior:
```python
import scanpy as sc
import numpy as np
import diffxpy.api as de
adata = sc.AnnData(np.random.normal(size=(100,10)))
de.test.rank_sum(adata, grouping=np.tile('a', …
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Dear @willtownes,
Thanks for making the code for Nonnegative Spatial Factorization available! I really want to start playing with this. Would it be possible for you to create a Jupyter/Colab Notebo…
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Good day,
First of all, thank you for making this incredible resource! And also for making it accessible already. I have downloaded the loom file and have tried to load and convert it into AnnData …
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Trying to cherry-pick a squash-merge results in errors like:
```
ct 29 18:13:42 meeseeksbot app/web.1: ----------------------------------------
Oct 29 18:13:42 meeseeksbot app/web.1: == Cleani…