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Hi,
Thanks for the nice work on SCENIC.
I was reading the Van de Sande paper, and trying to understand how the coupling between TFs and genes is determined during the step that determines the GR…
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Dear Dr. Mikhail
Thanks for organizing all the resources beautifully. They help me a lot and I wish to contribute to it. My suggestions are:
1. simpleSingleCell seems to migrate to "Orchestrating …
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Dear Seurat authors and contributors,
as I have just started reading the documentation on SEURAT for scRNA-seq, I would appreciate having your answers and insights please on the following :
1 …
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Hello
I need help please
I havd a Seurat object of PBMCs comes from 10X multiome's 3' poly-A capture (scRNA-seq&ATAC-seq)
After reading `filtered_gene_bc_matrices` of each sample, I extract…
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Great package and superb documentation.
Maybe I missed it in the documentation but is it possible to plot integrated scRNA-seq and scATAC-seq on the same UMAP?
As in the examples here https://sat…
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Dear scVelo developers,
First off, thanks a lot for your amazing work and this cool software!
I encountered an issue while working with scVelo.
I'm trying to do velocity analysis for CD4 t cel…
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Hello,
I am reanalyzing the old scRNA-seq dataset. It was originally analyzed with Cell Ranger version 2.0.2. Now, I use version 6.0.1. I observe significant differences in the detected gene (nFeatur…
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https://mp.weixin.qq.com/s/8pjHupf2r0YdkfEQvhZ5fA
ixxmu updated
2 years ago
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Hey @rob-p and @k3yavi! Avi and I have chatted a bit about this offline, and [I've commented about this in the past](https://github.com/COMBINE-lab/salmon/discussions/629#discussioncomment-777414), bu…
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Hi
Indeed this is not an issue with your package rather my question
I have a Seurat object with two conditions and several clusters
```
> unique(immune.combined.sct@meta.data$Condition)
[1]…