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Input data file a: Aligned reads file obtained from mapping short reads to a reference genome
Short reads means that only gDNA reads, Right?
Thank you very much.
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Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment - Michael B. Burns et al. - Genome Med
https://pubmed.ncbi.nlm.nih.gov/26170900/
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```
The .abi files given to me by my sequencing core do not contain quality data
about the base calls. Consequently, seqtrace is reading the confidence of every
call as '0', and will not let me edit…
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```
The .abi files given to me by my sequencing core do not contain quality data
about the base calls. Consequently, seqtrace is reading the confidence of every
call as '0', and will not let me edit…
-
Hello,
Thank you for this excellent tool! It is working very nicely on HiSeq/MiSeq data generated from amplicon sequencing of a non-model organism.
I wonder, after stutter filtering, is there …
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# Problem Statement
By April 2023, the data standards will be aligned to FAPI 1.0 Final inclusive of Pushed Authorization Requests (PAR), JWT Secured Authorization Response Mode for OAuth 2.0 (JAR…
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I am trying to install RSEM but not able to see software sub-directory. Moreover not sure what is $(your_favorite_location) in the clone command?
Please advice..
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I found the paper "Multiplexed droplet single-cell rNA-sequencing using natural genetic variation" mentioned eight samples , but there are only five fastqs in EBI of SRP102802. and there are only…
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Hello
It wasn't clear to me that whether short reads were necessary for Lorean?
I have long read sequencing RNA data but no short reads. I ran the example dataset without the short read and it se…
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Hi,
Nice package for multi-omics! Many thanks for developing and maintaining it.
I have a multi-omic dataset and wanted to create a simulated dataset based on it.
That dataset have a block of da…