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@caiw tried to fix it with
```
# This gets the directory of the toolbox, assuming that *this file you're reading right now* is in the root directory of
# the toolbox
TOOLBOX_DIR=$( cd -- "$( dir…
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### Summary
A MapNode gets stuck trying to submit a job to the cluster.
### Actual behavior
I have a data loading function that passes lists into a MapNode. Each subnode that the MapNode creates …
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`RealMemory` is not set correctly in the Slurm node configuration.
Should be fixed by upgrading `stackhpc.openhpc` role.
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xref https://github.com/bcbio/bcbio-nextgen/issues/3097
Slurm 19.05 outputs an additional header, breaking the `sinfo` parsing.
Cheers
M
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OrthoFinder version 2.5.5 Copyright (C) 2014 David Emms
2024-06-02 15:53:19 : Starting OrthoFinder 2.5.5
64 thread(s) for highly parallel tasks (BLAST searches etc.)
8 thread(s) for OrthoFinder a…
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Hi, I am having a question similar to #102
I am trying to run ManiSkill2 on a Slurm cluster with headless GPUs. Because I do not have sudo I cannot copy the recommended json files from the troublesh…
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I moved `/var/spool/slurmctld/` to be saved onto NFS but this increases slurm latency and responsiveness. We need a better solution. Backup and delete logs once a month or something.
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Move the default
SlurmctldLogFile=/var/log/slurm/slurmctld.log
SlurmdLogFile=/var/log/slurm/slurmd.log
to FSS
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Hola Miguel,
I am not able to run your code after installing it:
```-bash-4.1$ ./slurm_reports --start 2016-05-30 --end 2016-06-01 -c config.ini report
Traceback (most recent call last):
File…
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updated prior to calling `run()`
For example, slurm sets the following environment variables:
SLURM_CPUS_ON_NODE
SLURM_MEM_PER_NODE
┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.…