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There is some redundacy in how slurm batch files are created: `desi_proc` uses [`workflow.procfuncs.create_batch_script`](https://github.com/desihub/desispec/blob/master/py/desispec/workflow/procfuncs…
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Hi,
After some days trying to start using magpie i don't know what to do.
I'm trying to use the basic terasort example but when i execute the job in a slurm cluster i get no output.
this is my sb…
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### Bug description
We recently uncovered what I believe is a PL bug in the way slurm multi-gpu is being handled. This seems to be caused by a change in slurm behavior for some recent versions (we …
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Apparently, Snakemake >=5.6.0 defines
- mem_mb
- disk_mb
- tmpdir
by default, cf.
- https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#standard-resources
At least the stand…
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We would like to add [LINSIGHT](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5395419/) into the annotation pipeline for the hg38 version of crg2 to predict the fitness consequences of non-coding mutat…
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@jelmerp
See README.md for submission notes.
`runner_script.sh` contains information about how to run each script. Each script is annotated more in detail with what is actually happening.
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It'd be nice if we had a uniform set of variables and such for dealing with this inside and outside of Ansible as well as inside and outside of Docker (e.g. the original place this script was develope…
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Hi!
I'm running a[ CWL/singularity based pipeline](https://github.com/gijzelaerr/spiel/) on our slurm cluster, but run into troubles:
```
WARNING:toil.leader:G/z/jobqZx851 ERROR : Could not crea…
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I'm getting errors in testing and attempted usage that Spindle cannot connect to some session. I'm installing as follows:
```bash
./configure --with-munge-dir=/etc/munge --enable-sec-munge --with-…
vsoch updated
3 years ago
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La coordinazione tra arkimaps e i suoi worker che fanno rendering è praticamente tutta nel file system: i dati sono nella working directory, la descrizione di un'immagine da generare è una piccola str…