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### Description of feature
https://www.biorxiv.org/content/10.1101/2022.01.31.478527v1
FYI the preprint that @Midnighter linked used PacBio's snakemake workflow for HiFi/nanopore reads with MEGA…
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from @tkphd
Conda is a common and useful tool, but it is simply invoked, not
introduced. Explain what it is (a Python distribution with virtual environment
isolation), how it helps (simplifies de…
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Hello,
I'm running TOBIAS on aggregated data from different single-cell ATAC-seq clusters. The ATACorrect step fails on a subset of clusters without any error message, but works on others. It consi…
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Hi Jianhui,
I was trying to run the pipeline on shark but I have got this error message:
'''
Start time : Wed Mar 17 14:35:21 CET 2021
/exports/humgen/jihed/miniconda3/lib/python3.6/site-package…
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**Is your feature request related to a problem? Please describe.**
I would like to create a docker that has a template snakemake pipeline (no data) inside, including all software dependencies. I can …
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**Snakemake version** 7.25.0
Importing another workflow from GitHub as a module produces an error at rules that use an Rscript
In cases when calling the rule from the module using `with:`, the f…
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**Snakemake version**
`7.30.1`
**Describe the bug**
`snakemake` fails when downloading a file with `FTP.remote`, even thouh it works fine with `HTTP.remote`.
**Logs**
```
$ snakema…
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I'm thinking of doing the command line for this snakemake app differently; right now I'm not using config files much, just the sample name. How does the below sound?
each command would be successiv…
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**Snakemake version**
Snakemake 6.10.0
**Describe the bug**
I am trying to request GPUs when running Snakemake using the GLS executor, and I'm running into the following error:
```Tracebac…
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Use snakemake Reporting function to make better reports of workflows, including basic graphs.