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Dear snparcher developers,
I encounter errors when I run the pipeline on real size datasets.
I get this kind of message during bam2gvcf, gvcf2DB, DB2vcf or concat_gvcfs.
```
Error in rule DB2…
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Make VirMake compliant with the standards of the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/) and its [Standardized usage rules](https://snakemake.github.io/sn…
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**Snakemake version**
5.15
**Describe the bug**
I'm able to trigger a bug with an undefined variable.
**Logs**
```
Traceback (most recent call last):
File "/fast/projects/medgen_resea…
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Hi,
Thanks for making the workflow publicly available. I'm trying to run a test dataset and getting the following error(s):
```
Error in rule eisar_ranges:
jobid: 29
output: results/…
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In a shell block, Snakemake prints the command string that will be executed from the shell:
```
rule printShellCommand:
shell: """
echo "Hello world"
"""
$ snakemake printShel…
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After you comment in the FindFungi repo I looked at your repo's. Interesting work!
Are you working on a web interface for snakemake? For metagenomics data?
What is the relation with the mgms repo?
…
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**Describe the bug**
There is an error running the workflow as it is.
**To Reproduce**
Built the docker image using Docker file provided with no errors. Downloaded the tutorial data and referenc…
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**Is your feature request related to a problem? Please describe.**
Snakemake [service rules](https://snakemake.readthedocs.io/en/latest/snakefiles/rules.html#service-rules-jobs) could be used for a…
zmbc updated
4 months ago
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I am trying to make a featurecounts rule ask for nodes adaptively based on input bam file sizes. Hence I tried to set the threads variable like this:
_threads: lambda wildcards, input: (int(input.s…
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Building DAG of jobs...
Error: Directory cannot be locked. Please make sure that no other Snakemake process is trying to create the same files in the following directory:
/home/ZZZ_Macc/tools/EukDet…