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bcgsc
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mavis
Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
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How to run mavis annotate directly?
#359
Weiyifan
opened
3 months ago
1
backmerge releases to develop_v3
#358
calchoo
closed
10 months ago
1
Release/v3.1.2
#357
calchoo
closed
10 months ago
1
#355 fix chromosome comparison check
#356
calchoo
closed
10 months ago
1
Validate step not aligning reads that start with a chr to evidence that don't have a chr
#355
calchoo
opened
10 months ago
0
fix errors on empty columns
#354
calchoo
closed
10 months ago
1
Release/v2.2.12
#353
calchoo
closed
1 year ago
1
#350 fix overlapping imprecise breakpoints in mavis v2
#352
calchoo
closed
1 year ago
2
Bump Snakefile version to release 3.1.1
#351
zhemingfan
closed
10 months ago
1
error:('error: expected one of', {'duplication'}, 'but found', 'deletion'
#350
Nitin123-4
closed
10 months ago
10
Release/v3.1.1
#349
calchoo
closed
1 year ago
1
adding gridss vcf support to mavis
#348
calchoo
closed
1 year ago
1
filtering unmapped, duplicate, qcfailed reads from ref/alt calculation
#347
calchoo
closed
1 year ago
2
Improvement/add arriba test
#346
calchoo
closed
1 year ago
3
ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected)
#345
min-codes
opened
1 year ago
0
Update mini.md
#344
creisle
opened
1 year ago
1
master back to dev
#343
creisle
closed
1 year ago
0
Refactor/enforce isort
#342
creisle
closed
1 year ago
1
Feature/enforce isort
#341
creisle
closed
1 year ago
0
Ignore type-checking only lines in coverage report
#340
creisle
closed
1 year ago
1
Release/v3.1.0
#339
creisle
closed
1 year ago
1
Require mavis config 1.2.2+
#338
creisle
closed
1 year ago
1
Bugfix to Summary module clustering output
#337
zhemingfan
closed
1 year ago
1
Change support for MAVIS input in summary module
#336
zhemingfan
closed
1 year ago
4
snakemake.exceptions.WorkflowError: Config file is not valid JSON or YAML
#335
mattdoug604
opened
1 year ago
12
Unused variables in validation module
#334
zhemingfan
opened
1 year ago
2
Refactor/simplify tests
#333
creisle
closed
2 years ago
1
Docker Validation Error - tutorial full
#332
husamia
opened
2 years ago
3
Move class method off of class definition
#331
creisle
closed
2 years ago
1
Feature/simplify split algn
#330
creisle
closed
2 years ago
1
Feature/add arriba support
#329
calchoo
closed
2 years ago
1
Split read gathering methods into a separate module
#328
creisle
closed
2 years ago
1
Change support for MAVIS input
#327
zhemingfan
closed
1 year ago
1
#325 Adding arriba support
#326
calchoo
closed
2 years ago
2
Add support for Arriba
#325
calchoo
closed
2 years ago
0
Integrate CHM13-T2T support
#324
zhemingfan
opened
2 years ago
0
Add compression step to MAVIS snakemake v3
#323
creisle
opened
2 years ago
0
Integration information from fusion calls with transcriptomic data
#322
zhemingfan
opened
2 years ago
0
Convention Deletion Bug
#321
zhemingfan
closed
1 year ago
0
Adopt cutesv error handling
#320
zhemingfan
closed
2 years ago
1
Summary module swaps LR to RL orientation
#319
zhemingfan
closed
2 years ago
1
Feature/straglr
#318
creisle
closed
2 years ago
1
Straglr conversion support to json for MAVIS annotation
#317
sarahdada
opened
2 years ago
5
Update README.md
#316
zhemingfan
closed
2 years ago
3
master back to dev
#315
creisle
closed
2 years ago
1
Release/v3.0.0
#314
creisle
closed
2 years ago
2
Bugfix/enforce unique tid
#313
creisle
closed
2 years ago
2
Add wheel upgrade recommendations for users
#312
zhemingfan
closed
2 years ago
1
Make template metadata file optional
#311
creisle
closed
2 years ago
1
Optional parameters are required
#310
zhemingfan
closed
2 years ago
0
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