issues
search
bcgsc
/
mavis
Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
72
stars
13
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Feature/fix rtd typo
#309
creisle
closed
2 years ago
1
Feature/reorganize tests
#308
creisle
closed
2 years ago
1
Modify DGV annotations to more general tab format to support complex SVs
#307
zhemingfan
opened
2 years ago
0
Feature/gff support
#306
creisle
closed
2 years ago
2
Add local assembly support for breakpoint validation in Nanopore inputs
#305
zhemingfan
opened
2 years ago
1
Add support for converting gtf/gff3 files
#304
creisle
closed
2 years ago
2
Feature/more type annotations
#303
creisle
closed
2 years ago
1
Offer support for conversion of gtf and gff files to MAVIS json format
#302
zhemingfan
closed
2 years ago
7
Feature/type annotations
#301
creisle
closed
2 years ago
1
Feature/sniffle convert handling
#300
zhemingfan
closed
2 years ago
1
Feature/stdz logging
#299
creisle
closed
2 years ago
1
Feature/annotations cleanup
#298
creisle
closed
2 years ago
1
Performance/pyfaidx
#297
creisle
closed
2 years ago
1
Bugfix/support validation skip
#296
creisle
closed
2 years ago
1
Test using pyfaidx instead of Biopython for loading reference FASTA files
#295
creisle
opened
2 years ago
4
Long reads support for Sniffles files
#294
zhemingfan
closed
2 years ago
2
Edited docker container needed for long reads support and added to documentation
#270
zhemingfan
closed
2 years ago
1
Cleaned up vcf.py and added unit tests for sniffles and cuteSV
#269
zhemingfan
closed
2 years ago
1
Release/2.2.11
#268
calchoo
closed
2 years ago
1
Feature/python3.9 10
#267
creisle
closed
2 years ago
2
Feature/v3 pysam upgrade
#266
creisle
closed
2 years ago
1
Upgrade Pysam
#265
creisle
closed
2 years ago
3
Bugfix/debug dependency install
#264
creisle
closed
2 years ago
1
Limit setuptools version
#263
zhemingfan
closed
2 years ago
0
Add pyproject toml features
#262
zhemingfan
closed
2 years ago
0
Swap to pyproject.toml and setup.cfg instead of setup.cfg
#261
creisle
closed
2 years ago
3
Update setup to include correct mistune version
#260
zhemingfan
closed
2 years ago
0
Viral integration
#259
oghzzang
opened
2 years ago
1
TypeError: __init__() missing 1 required positional argument: 'args'
#258
imsarath
opened
2 years ago
1
Release/2.2.10
#257
calchoo
closed
2 years ago
1
#253 adding qos priority to slurm
#256
calchoo
closed
2 years ago
1
#254 fix nan values confusing downstream None checks
#255
calchoo
closed
2 years ago
1
TypeError: object of type 'float' has no len()
#254
calchoo
closed
2 years ago
0
enable QOS priority setting in slurm
#253
calchoo
opened
2 years ago
0
Fix mavis config TypeError when invalid tool is given
#252
mattdoug604
closed
2 years ago
1
add formal support for MuTect input
#251
mattdoug604
closed
2 years ago
4
Fix mavis config TypeError when invalid tool is given
#250
mattdoug604
closed
3 years ago
3
add formal support for MuTect input
#249
mattdoug604
closed
2 years ago
4
Feature/test singularity
#248
creisle
closed
3 years ago
2
Feature/split config pkg
#247
creisle
closed
3 years ago
1
Error during MAVIS setup
#246
sarahdada
closed
2 years ago
12
Convert to pytest syntax
#245
creisle
closed
3 years ago
1
Feature/use pandas
#244
creisle
closed
3 years ago
1
Feature/use docker
#243
creisle
closed
3 years ago
1
Feature/docs and types
#242
creisle
closed
3 years ago
1
Use snakemake to manage mavis scheduling
#241
creisle
closed
3 years ago
2
Annotate sv caller outputs standalone
#240
MorganHow
closed
3 years ago
2
#237 Fix paths in annotation doc
#239
calchoo
closed
3 years ago
1
OSX Installation Issues - exited with status error 1
#238
zhemingfan
closed
2 years ago
6
MAVIS annotation page images not loading
#237
zhemingfan
opened
3 years ago
0
Previous
Next