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Hi Marc and Harald,
I contacted Sciex to help me with an issue during import of a peptideshaker generated mzid file into the SWATH micro app.
The Sciex support said the following:
> "I’ve had a cha…
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When running PeptideShaker with the following invocation,
```
java -Djava.awt.headless=true -d64 -Xms512m -Xmx16g \
-cp .../PeptideShaker-1.13.0.jar \
eu.isas.peptideshaker.cmd.PeptideShakerCLI…
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Hello,
Would like to use the GO Analysis tool in Peptide shaker that is installed on a PC without internet access (or rather there is a firewall blocking Peptide shaker from accessing internet reso…
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Hi, I encountered a wired issues about Waters data.
I convert raw data from RAW to mzxml with msconvert( now they have lockmass refiner to correct the data). The mzxml data still have the lock mass…
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Is there a recommended sampling and storage portion for this protocol?
https://github.com/sr320/LabDocs/blob/82c0f06869baa574a85479f24b7421aa1b76d5ca/protocols/ProteinprepforMSMS.md
I am intereste…
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Hi,
I am trying to install FairSoft on HPC, the default C compiler is 4.8.2 in
/usr/bin/gcc
but it can be changed through "module load gcc/x.x.x".
1. One issue I noticed is that, even I …
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Hej, I don't know whether this is the correct place to ask for this, but we need some more file formats, which we can use for input and output at bio.tools:
- CSV: the simple comma separated values
- …
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When exporting fragment ion identification features, such as the peak annotation / peak intensity etc, the lines appear duplicated in the report (ergo, every spectrum has the same fragment ion annotat…
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Synapter objects have become very big now + I am doing many synapter analysis in a loop (i.e. I perform up to 20 transfers). To save memory I am doing the following:
1. using the same variable for syn…