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Hi,
I'm intending to package Ragout for Debian. When I try to test the result I get:
$ ragout examples/E.Coli/ecoli.rcp --outdir examples/E.Coli/out/ --refine
[14:37:25] INFO: Starting R…
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Hi,
I am new with Pomoxis and I am trying to run a polishing step on budgerigar transcriptomic data after genome reference-based assembly but I am getting an error in the step of generating consens…
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The author of https://doi.org/10.21105/joss.00497 is recorded `L. Warren, René` when it should be `Warren, René L.`.
```console
$ curl -H "Accept: text/bibliography; style=bibtex" https://doi.org/…
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Hi Haibao,
From your MCscan tutorial: []https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)
> That's it! This calls LAST to do the comparison, filter the LAST output to remove tande…
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Currently the GCV implements its data flow via mixins, that is, rather than replicating immutable objects to add additional attributes to, it uses the immutable objects as the prototype for new, mutab…
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I created a new conda environment for ragout:
```
$ conda create -n ragout -c bioconda ragout
The following NEW packages will be INSTALLED:
ca-certificates: 2018.03.07-0 …
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Hi,
I ran `/mySyntenyPortal/mySyntenyPortal build -p 24 -conf lab.cnf` but I got:
```
Building a website...
##### Read a configuration file #####
- /QRISdata/Q0231/mysytenyportal/lab.cnf
Wron…
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Currently, tooltips are tightly coupled with the D3 visualizations. This makes them hard to extend and prevents their use outside of the visualizations. Encapsulate tooltips in their own module indepe…
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In a conversation with CollecTF, the question was raised, "Why isn't 'genomic context evidence' a child of 'similarity evidence'?"
**genomic context evidence**
**def:** A type of evidence in which…
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Lots of comments/request relating to about orthologs and alignments
ORTHOLOGS and ALIGNMENT
I would like the 'ortholog' section to be expanded to include more species, particularly other fungal m…