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I try to run hicanu ( `canu v2.3 `) for human hifi data on a slurm cluster and I cannot solve these errors.
Here is the command I used in my Slurm script
```
#!/bin/bash
#SBATCH --job-name=can…
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Hi there,
It might be mentioned somewhere, but I am just curious what kind of data is inside the example file "http://s3.amazonaws.com/nanopore-human-wgs/bulkfile/PLSP57501_20170308_FNFAF14035_MN16…
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I only have 10X illumina data ,approximately the sequencing depth 63X.can i use it to assess my assembly sequence assemlied using hifi data ?
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Hello SigProfilerExtractor team,
Thank you for developing such a nice tool! I am trying to extract COSMIC Signatures from whole exome sequencing data (vcfs downloaded from TCGA), but in the result ac…
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I want to assembly a genome from paired-end Illumina short reads (2x150). I realize this will be fairly fragmented, for my purposes that is ok for now. I just need to estimate the system resources to …
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Hi,
I am applying pcadapt to a dataset of pool-seq whole genome sequencing for 12 populations (~50 million SNPs). I tried to apply SNPs thinning with the LD.clumping option, but I get the same num…
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Hello, ENCODE would like to request a term for Illumina's MiniSeq sequencing platform.
NTR: Illumina MiniSeq
* **Alternative terms:** MiniSeq
* **Textual definition:** A small benchtop DNA seq…
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Hello,
This is more of a comment than an issue.
First, thanks for the thorough work on providing these reference datasets. This is incredibly useful.
Would you have any reservations in recommen…
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Hello,
I want to assemble a genome with Oxford Nanopore reads and everything works fine until bogart. Can someone help me? Restarting canu results in the same error.
Canu is running on a virtual…
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Thanks a lot for making vep more and more completed
grch37 and vep104
http://ftp.ensembl.org/pub/grch37/release-104/variation/vep/
does cache data here has all the database annotation needed as m…