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We have built a mutant library for cucumber and have completed resequencing some of the individual plants, finding a number of proteins with non-synonymous mutations. We have translated these proteins…
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When I ran an open ColabFold1.5.3 on my browser this morning for a multimer_v3 job, it crashed at the "Run Prediction" stage right after collecting the MSAs and drawing the sequence coverage plot, wit…
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## Expected Behavior
Recently when we attempted to run AF2 on a complex but failed with following error message. We then test it with a notebook we ran before and same error was generated. Please hel…
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## 🚀 Feature
I propose adding protein sequence data to MolNet as part of the recent efforts to increase support for proteins. Please feel free to suggest alternative datasets or use cases that shou…
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Heyy,
I've already predicted several protein structures with Alphafold2.0 using a colab-notebook. But I have to predict around 100 protein structures and so I've heard about Omegafold wich can pred…
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Recently, this problem has occurred in all runs
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Hi,
I need the single representation in L x 384 format, linear transformed on the first msa row, because of downstream analyses. It seems that issue #472 partly dwelves into this, but I can not rea…
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**What is your question?**
I am planning to use ColabFold on a batch of sequences and am currently trialing the program on just 3 of my sequences (file name: test.fasta). When I run 'colabfold_batch …
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make sure checkpointing works, or see if evoformer can be made reversible
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## Expected Behavior
Fully functioning colab_batch with GPU.
## Current Behavior
colabfold_batch: error: unrecognized arguments: --use-gpu-relax
## Steps to Reproduce (for bugs)
Install as de…