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User Need:
Need to bulk download data across multiple selected data or data within a certain category.
User Scenario:
* Navigate to dataset search page
* Filters datasets by specified assay typ…
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Hello,
I have a list of seurat objects that I read into a list. Then I merge them, split them by experimental condition, perform standard steps but when running the function FindIntegrationAnchors()…
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Firstly, thank you for putting together such a useful tool!
Apologies in advance if this is a naive issue as I am relatively new to R and scRNAseq analysis. I am trying to use Lamian to compare pse…
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**Is your feature request related to a problem? Please describe.**
At the moment, Hintikka data is used for basically all analysis in OMA book. However, I see a problem in the [MOFA section](https:/…
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Hello,
I use scmap to annotate cell types based on a reference annotation dataset. The reference annotation dataset was downloaded from celldex. However, I encounter an error when I choose HumanPr…
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When using the OBI lookup service for terms relevant to targeted/untargeted metabolomics and proteomics assays used in MoTrPAC data, I wasn't able to find the terms for the following:
```
Targeted 3…
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Hi,
I am very new to scrna analysis.
I have downloaded the .h5ad object from synapse.org. and fetch the count matrix(code is mentioned below)
adata = read_h5ad('hNSPC.h5ad')
sp.io.mmwrite("matr…
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Hi, Shifu @sfchen
`html` and the `json` format are good , but the `tsv` format output could be a charming option when performing parsing for the downstream analysis.
In addition, can you add t…
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Add a method that facilitates handy visualization of paired samples on a box/jitterplot, pairs indicated by (coloured lines) as shown in the figure.
Tentative gists for
- [taxa abundances](https:…
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Hello!
I am trying to use SAVER, hoping that imputed data will give rise to better gene correlation analysis. Thus, I am running on the RNA slot of a CCA integrated Seurat object. However it breaks…